Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00040 ATGGAAGCAGCGTCAGGCATGAGCAGTGAAGGGCGGCCCATCCAATGCAAAGCCGCCGTGTGTCGTAGAGCCGGCGAGCCACTGGTAATCGAGAATGTCATGGTGGCGCCGCCCATGTCTCGTGAAGCTCGTATCCGCATCACATGCACCTCTCTGTGTCACAGCGACATCACATTCTGGAGGATGAAGGATCCACCAGGAATTTGCCCCAGAATTCTGGGTCACGAGGCCGTCGGGGTGGTGGAGAGCGTGGGAGAAGAAGTGAGGGAAGTGGAGAAAGGGGACGTGGTGGTGCCGGTGTTCCTGCCAGAATGCGGCGAGTGTGAGGACTGCAGGTCAACGAAGAGCAACCTGTGTTCCACGGTGAGGTTCAGGGTGTCGCCGTGGATGGCCAGGCACGAGAGCACCAGATTCACCGACATGAAAGGCAACCCCATATATCACTTCCTCTTTGTCTCCAGCTTCAGCCAGTACACCGTCGTTGACGTTGCCAATCTCGCCAAGATTCATCCCTCCCTCCCTCCCAACAGGGCCTGCCTCCTCAGCTGTGGTGTTTCTACTGGGGTAGGTGCTGCTTGGGTGACGGCGGCTGTGGAAGCAGGCTCTACGGTTGCTATATTTGGGCTGGGTTCTATTGGATTAGCTGTTGCGGAGGGGGCTAGACTCTGTGGAGCTGGGAGGATTATAGGGGTGGATCTGAACCCTGATAAATTTGAGATCGGGAAAAAGTTTGGCGTCACCCACTTCGTCAATTCCGGAGAATGTGGGGACAAACCTGTTAGCCAGGTAATCAAGGAGATGACTGGTGGAGGCGCAGATTATTGCTTCGAATGCGTGGGGATGGCGTCGTTAGTGCATGAAGCATATGCTTCTTGTCGAAAGGGATGGGGGAAAACAATAGTGGTGGGGGTTGACAAACCAGGATCCAAGTTATCCCTAAGTTCAGCTGAAGTCCTTCATAGTGGAAAAGTCCTCACGGGATCCTTATTTGGGGGACTCAAACCCAAGACTCATATTCCCATTCTGGCCAAGCGCTATCTTGACAAGGAACTGCAGCTGGATGATTTTGTCACCCACGAGATTGACTTCGAGGACATAAACAGGGCTTTTGATTTATTGCTTGAAGGACAGTGTCTTCGATGTGTGATTTGGATGAACAAATAA 1164 0.5309 MEAASGMSSEGRPIQCKAAVCRRAGEPLVIENVMVAPPMSREARIRITCTSLCHSDITFWRMKDPPGICPRILGHEAVGVVESVGEEVREVEKGDVVVPVFLPECGECEDCRSTKSNLCSTVRFRVSPWMARHESTRFTDMKGNPIYHFLFVSSFSQYTVVDVANLAKIHPSLPPNRACLLSCGVSTGVGAAWVTAAVEAGSTVAIFGLGSIGLAVAEGARLCGAGRIIGVDLNPDKFEIGKKFGVTHFVNSGECGDKPVSQVIKEMTGGGADYCFECVGMASLVHEAYASCRKGWGKTIVVGVDKPGSKLSLSSAEVLHSGKVLTGSLFGGLKPKTHIPILAKRYLDKELQLDDFVTHEIDFEDINRAFDLLLEGQCLRCVIWMNK 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00040 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Accr3g00040 387 Gene3D - 19 380 - -
Accr3g00040 387 SUPERFAMILY GroES-like 336 384 IPR011032 -
Accr3g00040 387 SUPERFAMILY GroES-like 9 197 IPR011032 -
Accr3g00040 387 FunFam Alcohol dehydrogenase 6 19 200 - -
Accr3g00040 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
Accr3g00040 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Accr3g00040 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Accr3g00040 387 Gene3D - 188 328 - -
Accr3g00040 387 Pfam Alcohol dehydrogenase GroES-like domain 42 167 IPR013154 -
Accr3g00040 387 PANTHER ALCOHOL DEHYDROGENASE 12 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00040 Accr-Chr3 563247 566120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00040 41 183 Monolignol Biosynthesis Gene Families AT4G37970 26.389 8.45e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00040 K00121 - qsu:112018306 584.334