Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00025 ATGGGAAACTGCCTGGACAAATTTAGCACAAGCCCAAAGACAAGTGCTAGCGCTGCAGCTTCAGACTTGGATTATTGGGAGGGGCTGAGTCCCACAGGCAAAATTGTTACGACGCCAAATCTAAAAATCTTCGGTTTAGAGGAGCTCAAGAGTGCCACCAGAAATTTCAGACCCGACACAGTGCTGGGGGAAGGTGGCTTTGGCAGAGTATTTAAGGGGTGGATCGACCAAAACACCCTCAAGCCCTCCAAAGTTGGTGTTGGAATCCCTGTCGCCGTCAAGAGATCTAATCCTGATAGTCTTCAGGGCTTGGAAGAATGGGAGAGCGAGGTAAAATTCCTGGGAAAGTTCTCTCATCCCAACCTGGTGAAACTTGTTGGCTACTGCTGGGAGGAGAATCAGCTAATGCTTGTATACGAATACATGCAGAAGGGCAGCTTGGAAAACCACCTATTTGGAAGAGGACCCGACCCACTTGCATGGGACGTAAGGCTCAAGATCGCCATAGGAGCAGCTCGAGGCCTGGCCTTCCTCCACGCCTCCGAGAAGTCTGTTATCTATAGGGACTTCAAGTCCTCCAACATTTTGCTGGATGGGGAGTTCAACGCCAAGCTTTCAGATTTCGGGTTGGCCAAGCTAGGCCCCGTCAACGGCAGATCCCACATAACCACCCGAGTCATGGGCACTTACGGCTATGCGGCCCCCGAGTATATAGCCACCGGGCATCTGTATGTGAAAAGCGACGTGTACGGGTTTGGCGTAGTGCTGTTAGAAATTCTGACAGGCTTAGTGGCGCTTGATCCCAACAGGCCCAGGGGGGAGCAAAATTTGGTGGATTGGAAGAAACCCTATTTGAGCCATAAGAAGAGGCTGAGAGCCCTAATAGACCCGAAACTGGGCCTCAAGTATCCACTAAGCGCCGCGTTTAACATATGCCGCCTCATCGTGAAATGTTTAGAGCCCGATCCCAAAAATCGACCCTCCATGCAGGATGTGTTGATCACTTTAGAGAGGACCTATCACACCCCACATAATCCCAAGCCCAACTGTAACGCCAAGCCCATAAAGCCCGCTTCCCTTCAACCAGCCTCTGCCTCCCCAATTCCGTAG 1110 0.5144 MGNCLDKFSTSPKTSASAAASDLDYWEGLSPTGKIVTTPNLKIFGLEELKSATRNFRPDTVLGEGGFGRVFKGWIDQNTLKPSKVGVGIPVAVKRSNPDSLQGLEEWESEVKFLGKFSHPNLVKLVGYCWEENQLMLVYEYMQKGSLENHLFGRGPDPLAWDVRLKIAIGAARGLAFLHASEKSVIYRDFKSSNILLDGEFNAKLSDFGLAKLGPVNGRSHITTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGLVALDPNRPRGEQNLVDWKKPYLSHKKRLRALIDPKLGLKYPLSAAFNICRLIVKCLEPDPKNRPSMQDVLITLERTYHTPHNPKPNCNAKPIKPASLQPASASPIP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00025 369 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 142 348 - -
Accr3g00025 369 ProSitePatterns Protein kinases ATP-binding region signature. 62 94 IPR017441 GO:0005524
Accr3g00025 369 Pfam Protein tyrosine and serine/threonine kinase 60 333 IPR001245 GO:0004672|GO:0006468
Accr3g00025 369 SUPERFAMILY Protein kinase-like (PK-like) 36 348 IPR011009 -
Accr3g00025 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Accr3g00025 369 CDD STKc_IRAK 62 338 - -
Accr3g00025 369 MobiDBLite consensus disorder prediction 343 369 - -
Accr3g00025 369 Gene3D Phosphorylase Kinase; domain 1 40 141 - -
Accr3g00025 369 PANTHER OS01G0588500 PROTEIN-RELATED 21 338 - -
Accr3g00025 369 FunFam Serine/threonine-protein kinase BIK1 27 141 - -
Accr3g00025 369 ProSiteProfiles Protein kinase domain profile. 56 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr3g00025 369 Gene3D Transferase(Phosphotransferase) domain 1 142 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00025 Accr-Chr3 345848 347375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00025 42 336 Glycoside Hydrolase AT3G07070 50.336 4.50e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Accr3g00025 PK_Tyr_Ser-Thr 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00025 - - qlo:115974643 509.605