Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00019 ATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCAGATGAGAGCTATCATTTTGAGAGGATGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACGATAGAAACCGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGCAAACTAGTTTGCCCTTTGACTCTGAAAGAACTAAAAAGCACAGAACTAAATCCCAGTATTGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAACGAAGCAGCACAGCTGGACATGGCTCGTAGGTCATTGAATATGGGTAGTCCTGAAAATGATACATTACAGGCTTTGCATTATATCCAACATATCTGCCAAAGAAGTCGGTCTAATAAGCACATTGTCCGTAGTGCGGGGCTTATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACAGCTTTGGGAACCCTTAGAATTGTTGTAAAGGAAGACAATGAGAATAAGGAATTGTTGGCTGAAGGGGACACTGTGCGTACAATAGTAAAATTCCTTTCTCATGAACTCTCTAAAGAAAGAGAGGAAGCTGTCTCTTTGCTTTATGAGCTCTCAAAATCAGAACCTCTATGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATTTTGACTGTTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAACAATGTGCGACAGATGGCTGAAAATGGTCGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCACCTGAAACCAAACTGGCCATGGCTGGATACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTAGCCAAAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCCAGGGAAGCTTCGCTGAAAGCTCTTAATCAAATATCATCCTGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTCAATGACCTTTTCTCTATGGGTCCTAATCAGCTTCCAATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGAGAAGACTTTGATTCCATCCCATTTGGACCAGATCACGAGACTCTGGTTTCTGAGGACATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCCGCTATTGAATGCAAACTTCTACAAGTCCTTGTTGGACTTACCAGTTCTCCAACTACTGTTCTGAGTGTTGTTACAGCTATCAAAAGCTCTGGTGCGATTATCAGTCTCGTCCAATTTATTGAGGCTCCACAGAAAGATTTGCGTGTTGCATCCATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTAGCTGATGCATTACGTGGTTCAGTTGGACAACTGGGCAGTCTAATTAAAGTCATATCAGAAAATGCGGGAATTAGTGAAGAGCAGGCAGCAGCTGTTGGGCTTCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTATACTCTAGAGTGATTACCATTAGGCAGGGAGAGATCAGAGGCAGCCGCTTTGTGACACCATTTCTTGAAGGGCTCGTGAAGATTCTTGCAAGGCTTACATTTGTATTGGCAGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAGCCTTGCTGCACTATTTATTGAACTTCTTCAGTCCAATGGCCTTGATAATGTACAGATGGTTTCTGCTATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAGTTTAACAAAATTACCTGAGATGCCATCTCCTGGCTTTTGTGCCTCAATATTTCCATGCCTTGGCAAACAGCCTGTCATAACAGGTTTGTGTAGGCTCCACCGAGGGCTATGTTCATTAAAAGAAACATTTTGTCTGATTGAAGGGCAGGCAGTACGTAAGTTAGTAGCCCTACTGGACCACACAAATGTAAACGTGGTTGAGGCAGCACTGGCAGCTTTATCTACATTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATACTTGATGTGTTACTTGAGAAACGAACAGAAAATCTGAGGCGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGATATAGCCTATGAAGTTTCTGGTGATCAGAATGTGGGTACTGCACTTGTTGACGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTGGACAAGATTCCAAACTTCTCAGGAATTTTTCCAAACATGGGATAG 2445 0.4327 MMAASWDGSNDPGSQSDESYHFERMHIEPIYDAFVCPLTKQVMRDPVTIETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQALHYIQHICQRSRSNKHIVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVKEDNENKELLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSEPLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFSMGPNQLPMRLKEVSATILANVVNSGEDFDSIPFGPDHETLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISENAGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVITIRQGEIRGSRFVTPFLEGLVKILARLTFVLADEPDAISFCREHSLAALFIELLQSNGLDNVQMVSAIALENLSQESKSLTKLPEMPSPGFCASIFPCLGKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPILDVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00019 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 810 - -
Accr3g00019 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 116 IPR013083 -
Accr3g00019 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Accr3g00019 814 SUPERFAMILY ARM repeat 122 445 IPR016024 -
Accr3g00019 814 SUPERFAMILY ARM repeat 453 802 IPR016024 -
Accr3g00019 814 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Accr3g00019 814 Gene3D - 121 318 IPR011989 -
Accr3g00019 814 Gene3D - 573 802 IPR011989 -
Accr3g00019 814 Gene3D - 319 487 IPR011989 -
Accr3g00019 814 Coils Coil 254 277 - -
Accr3g00019 814 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 151 193 IPR000225 GO:0005515
Accr3g00019 814 SMART arm_5 348 393 IPR000225 GO:0005515
Accr3g00019 814 SMART arm_5 267 307 IPR000225 GO:0005515
Accr3g00019 814 SMART arm_5 182 222 IPR000225 GO:0005515
Accr3g00019 814 SMART arm_5 591 632 IPR000225 GO:0005515
Accr3g00019 814 SMART arm_5 140 180 IPR000225 GO:0005515
Accr3g00019 814 SMART arm_5 718 760 IPR000225 GO:0005515
Accr3g00019 814 SMART arm_5 673 714 IPR000225 GO:0005515
Accr3g00019 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
Accr3g00019 814 SUPERFAMILY RING/U-box 23 111 - -
Accr3g00019 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00019 Accr-Chr3 235928 239346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr3g00019 3 814 U-box Gene Family AT1G76390 65.356 0.0 1040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00019 - - gmx:100789746 1387.47