Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03644 ATGGAGGGAAAGACCGAGGAAGTGGAAGATATTGGAAGCGCTTCAAGTGGTTCATTTATTGATAATTCAGATGATGGGTCTTCAACTTTTGAATTAGATGACAAAGCACATCCCGAGGAACCTTTTACTGAGGAAGAAATAGAAGGTCTGATTGCTGAATTGTTAGAAGTCGAGGGCAAGGCCGCAGAGGCTCAAGAAGCTCTTGAGGAGGAGTCTCTTAACAAAGTAGAGATTGAGGTTAGGCGAGAGTTGGAGCAAACTCTTCAGGGCGATGATTTGGAATCTGCTGTTGCTGATGAGATGACTACTTTAAAGGAAGAGTGGGAAGCTGTTCTGGACGACCTTGAGACTGAAAGTTCTTACTTGCTGGAACAACTTGATATGGCTGGTGTTGAGCTGCCAAGGCTTTATAAGTGGATAGAAAAGGAGGCTCCTAATGGTTGTTTGACTGAAGCTTGGAAAAAGAGGAATCATTGGGTTGGTACTCGGGCAACTGAAGAATTTGTGGAGTCAGTTGCTGATGCTGAGAAGTATCTACAAGTCTGCAGACCTGTTAGAAGACGACATGGTAAACTGTTGGAAGAGGGTGCCAGTGGATTTCTTCAAAAAAGACTTGATGAATCCAGTGAACCAGTAAAGGAAAAAACTGAGGCAGATTGGGATATGTTTAACAAAATATTTCACGACGGTAGTGATGCTGATGCTTCATTTGGCAGTAAGAATTGGGCTTCTGTTTATTTGGCCAGCACACCGCAGCAAGCTGCACAGATAGGACTTGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGACGACATTGATGGCACTTCTGCTGATCCATTTATTGCGGCTGCAATTGCAAATGAAAAAGAGATAGAACTCTCTGATGGACAGAAAAGGAAATTCAAAAAGGTCAAAGAAGAAGATGATGTAATTGTTGGTCGGAAGCTTCAAATGCATTTAAAACGAAGGAGGTATCGAAAGAATAAAAAGCAGAGGGAAACTATAGAGAGTCTTAAACAGAAGTTTTCATCTGTTGATTGTTCTAATCCTGATATGGAGGAAGAAACTTGTGATGATGGCGAAAAGGCGACTAACAATGAAGTTGGATGTTTGAATATGAAGAATGATAACATTGAAGATCTGGGTAGCAATTATGACCTTGACCATGTGGAGCCTATGAATATTGGCCCTTTGCCAGAGCTCTCCAAATCTTCATTGCCTGATGTTGAACAGAGAGGTGCCAAGCGACTAAATGATGGTGAAGATTGTAGCGATACAAAAAAGAGTCGGACTGTCATTAACAGTGGTGATGAAGCTGATGTGGTTGAAAATAATATAGTTAGGAATACAAATGCATTAGATGATCAGTCTGAGATGCAAGGGACCTGTACCCGCATTGTTGATGGTCTTCCTTTACAGCACCTAGATAAGAAATTTTGCTGCACTATTTGTGATAAAGTAGCACTTGAAATTCACGAACATCCTCTTTTGAAAGTGATTATTTGCAGGGATTGCAATTCTTTAATTGAAGAAAAGAAACATATGAAGGATCTCCATCCTGATTGCTCTGAGTGTTATTGTGCATGGTGTGGAGGAAACAATGAATTAGTTAGCTGCAAGTCATGCAAAATGTTATTCTGCAACAACTGCATAAAGAAGAATCTTGGTACAGAATTCCTTGCTGAAGTTCGGGCCACTGGTTGGCTTTGTTATTGCTGTCGCCCAAATCTCTTGCAAAGACTCTTGTCACAACAAGAGAAAGCTTTGGAATCTGTCAAAACATCAGTTTCCAGCTCTAGTAGTGATTCAGATAATTCACAGGCAGAGATTAATGTTACAATCAGTTCTAAGCGAAAGCGCAAAAAGAAGATTAGGAGGATCCTTGATGATGCAGAATTAGGAGAGGAAACGAAAAGAAAAATTGCAATAGAAAAGGAGCGTCAGGAACGTTTGGAGTCATTGCGAGTGCAGTTTTCTGCCTCATCTAACATCATGGGCTCTTCTGGATATAATGGAAATTTATCTGAAGGTGGAAGTTCTGAAGTCCTTGGTGACGCATTAACAGGCTATGTTGTGAATGTGGTGAGGGAAAAAGGTGAAGAAGCTGTCAGAATTCCTCCAAGTATATCAGCTAAACTGAAAGCGCATCAGATTGTAGGAATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAAGTCCGGGGATAAGGGTCTTGGTTGTATTCTTGCTCATACGATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCAATGAGAAGCACTGATCTGGGGTTAAGAACTGCACTTATTGTCACACCTGTCAATGTGCTGCACAATTGGCGGCAGGAGTTTATCAAATGGGGGCCATCAGAAGTAAAACCTCTTAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGGGCAGAAATACTTGCAAAATGGAGGAAAAAAGGTGGCATATTTCTGATTGGCTATACTGCTTTTCGAAATCTGTCTTTTGGAAAACATGTGAAAGGTAGACACAAAGCCCGAGAAATTTGTCGTGCTTTACAGGATGGACCAGACATACTTGTTTGTGATGAAGCCCATATAATAAAGAATATAAAGGCTGACATAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTATTATTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGTAGTCATGAATTTAGGAATCGCTTCCAGAATCCTATAGAGAATGGTCAACATACCAATTCTACGTTGGATGATGTGAAGATTATGAACCAAAGGTCTCACATCCTCTATGAACATTTAAAGGGCTTTGTTCAACGAATGGACATGAATGTGGCGAAGAAGGATTTGCCTCCAAAAACTGTCTTTGTTATAAGTGTCAAGCTTTCTACCCTACAGAGAAAACTGTACAAGAGATTCCTTGATGTGCATGGATTCACAAATGACCGGGCTTCCAATGAAAAAATGAGAAAGAGATGTTTTTTTGTAGGGTACCATGCATTAGCTCAGATATGGAACCATCCTGGGATCTTGCAATTGACAAAAGAAGAGAAGGACTATGTAAGACAAGAAGATGCAGTTGAGAATTTTCTTGTGGATGACAGCTCTAGTGATGAAAATTCTGATTATAACGTGCCTGTTGGAGAGAAGGTTAGATGTGCAAATGAGTTGCTGCAAAGGAAAGACGAGAGTGGCTTTTTTCTAAAGGGTTGGTGGAATGATCTTCTGCATGAAAAAAATTATAAAGAACTTGATTACAGTGGCAAAATGGTTTTGCTCCTAGACATACTAACCATGAGTTCTGATGTTGGTGACAAGGTGTTGGTTTTTAGCCAGAGCATACCAACACTAGACCTCATAGAACTTTATCTATCAAGATTACCTCGACGAGGCAAACATGGCAAACTTTGGAAGAAGGGAAAAGACTGGTACAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGCTGGTTGAGAGGTTTAATGAGCCTTCCAATAATAGAGTGAAGTGCTCTCTTATTTCGACCAGAGCTGGTTCTTTGGGCATTAATCTCCATGCTGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTTCAGGCCATCTATCGAGCTTGGAGGTATGGCCAGAGAAAGCCTGTGTTTGCTTACCGGTTGCTGGCTCATGGAACTATGGAAGATAAAATATATAAGCGCCAGGTGACAAAGGAGGGGCTTGCTGCTAGAGTGGTTGACAGACAGCAAGTGTACAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAAAACCCTGAGACATTGGCTGAACTGAGCCAAGGGAATGGGCATTCAGTGGAGCAGACAGTACCACATTCAAATGGAACCAGCCATTCTGATAAGTTAATGGAAAGCTTACTTAGCAAGCATCATCCAAAGTGGATTGCCAATTATCATGAGCACGAATCGTTATTGCAAGAGAATGAAGAAGAAAAGCTTTCAAAAGAGGAGCAGGATATGGCTTGGGAAGTATACCGGAAAACGTTAGAGTGGGAGGAAGTGCAGAGAGTGCCACTGGGGGAGTCACTGCCTGTTCAAAAACCACAAGAGCCAAATGCAGCACCCCCTGCACCAAAGACCCGCAGCCTCTCACCAACAAGGTTGAGGAACAGTTTTGTAACACGCAAATGCACCAAACTTTCACACTTGCTTACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAAAACACAGATGGAAGAGCAGCAAGGTGGATTGCCAATTATCATGAGCACGAATCGTTATTGCAAGAGAATGAAGAAGAAAAGCTTTCAAAAGAGGAGCAGGATATGGCTTGGGAAGTATACCGGAAAACGTTAGAGTGGGAGGAAGTGCAGAGAGTGCCACTGGGGGAGTCACTGCCTGTTCAAAAACCACAAGAGCCAAATGCAGCACCCCCTGCACCAAAGACCCGCAGCCTCTCACCAACAAGGTTGAGGAACAGTTTTGTAACACGCAAATGCACCAAACTTTCACACTTGCTTACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACAATCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAAAACACAGATGGAAGAGCAGCAAGGTGGATTGCCAATTATCATGAGCACGAATCGTTATTGCAAGAGAATGAAGAAGAAAAGCTTTCAAAAGAGGAGCAGGATATGGCTTGGGAAGTATACCGGAAAACGTTAGAGTGGGAGGAAGTGCAGAGAGTGCCACTGGGGGAGTCACTGCCTGTTCAAAAACCACAAGAGCCAAATGCAGCACCCCCTGCACCAAAGACCCGCAGCCTCTCACCAACAAGGTTGAGGAACAGTTTTGTAACACGCAAATGCACCAAACTTTCACACTTGCTTACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAAAACACAGATGGAAGAGCAGCAAGGTGGATTGCCAATTATCATGAGCACGAATCGTTATTGCAAGAGAATGAAGAAGAAAAGCTTTCAAAAGAGGAGCAGGATATGGCTTGGGAAGTATACCGGAAAACGTTAGAGTGGGAGGAAGTGCAGAGAGTGCCACTGGGGGAGTCACTGCCTGTTCAAAAACCACAAGAGCCAAATGCAGCACCCCCTGCACCAAAGACCCGCAGCCTCTCACCAACAAGGTTGAGGAACAGTTTTGTAACACGCAAATGCACCAAACTTTCACACTTGCTTACGCTTAGAAGTCAAGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATCAGATGGGAGGACTTGAAAAACACAGATGGAAGAGCAGCAAGGTGA 5562 0.4275 MEGKTEEVEDIGSASSGSFIDNSDDGSSTFELDDKAHPEEPFTEEEIEGLIAELLEVEGKAAEAQEALEEESLNKVEIEVRRELEQTLQGDDLESAVADEMTTLKEEWEAVLDDLETESSYLLEQLDMAGVELPRLYKWIEKEAPNGCLTEAWKKRNHWVGTRATEEFVESVADAEKYLQVCRPVRRRHGKLLEEGASGFLQKRLDESSEPVKEKTEADWDMFNKIFHDGSDADASFGSKNWASVYLASTPQQAAQIGLEFPGVNEVEEIDDIDGTSADPFIAAAIANEKEIELSDGQKRKFKKVKEEDDVIVGRKLQMHLKRRRYRKNKKQRETIESLKQKFSSVDCSNPDMEEETCDDGEKATNNEVGCLNMKNDNIEDLGSNYDLDHVEPMNIGPLPELSKSSLPDVEQRGAKRLNDGEDCSDTKKSRTVINSGDEADVVENNIVRNTNALDDQSEMQGTCTRIVDGLPLQHLDKKFCCTICDKVALEIHEHPLLKVIICRDCNSLIEEKKHMKDLHPDCSECYCAWCGGNNELVSCKSCKMLFCNNCIKKNLGTEFLAEVRATGWLCYCCRPNLLQRLLSQQEKALESVKTSVSSSSSDSDNSQAEINVTISSKRKRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIMGSSGYNGNLSEGGSSEVLGDALTGYVVNVVREKGEEAVRIPPSISAKLKAHQIVGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSTDLGLRTALIVTPVNVLHNWRQEFIKWGPSEVKPLRVFMLEDVSRDRRAEILAKWRKKGGIFLIGYTAFRNLSFGKHVKGRHKAREICRALQDGPDILVCDEAHIIKNIKADITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEHLKGFVQRMDMNVAKKDLPPKTVFVISVKLSTLQRKLYKRFLDVHGFTNDRASNEKMRKRCFFVGYHALAQIWNHPGILQLTKEEKDYVRQEDAVENFLVDDSSSDENSDYNVPVGEKVRCANELLQRKDESGFFLKGWWNDLLHEKNYKELDYSGKMVLLLDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLPRRGKHGKLWKKGKDWYRLDGRTESSERQKLVERFNEPSNNRVKCSLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEDKIYKRQVTKEGLAARVVDRQQVYRTISKEEMLHLFEFGDDENPETLAELSQGNGHSVEQTVPHSNGTSHSDKLMESLLSKHHPKWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNAAPPAPKTRSLSPTRLRNSFVTRKCTKLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKNTDGRAARWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNAAPPAPKTRSLSPTRLRNSFVTRKCTKLSHLLTLRSQGTKFGCSTICGECAQEIRWEDLKNTDGRAARWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNAAPPAPKTRSLSPTRLRNSFVTRKCTKLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKNTDGRAARWIANYHEHESLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPVQKPQEPNAAPPAPKTRSLSPTRLRNSFVTRKCTKLSHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKNTDGRAAR 1853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03644 1853 CDD SF2_C_SNF 1111 1254 - -
Accr2g03644 1853 MobiDBLite consensus disorder prediction 1773 1798 - -
Accr2g03644 1853 Coils Coil 1477 1497 - -
Accr2g03644 1853 SMART ultradead3 710 931 IPR014001 -
Accr2g03644 1853 MobiDBLite consensus disorder prediction 11 26 - -
Accr2g03644 1853 Gene3D - 688 968 IPR038718 -
Accr2g03644 1853 Gene3D - 979 1329 IPR027417 -
Accr2g03644 1853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1312 IPR027417 -
Accr2g03644 1853 Pfam SNF2-related domain 737 1038 IPR000330 GO:0005524|GO:0140658
Accr2g03644 1853 MobiDBLite consensus disorder prediction 28 44 - -
Accr2g03644 1853 MobiDBLite consensus disorder prediction 1305 1331 - -
Accr2g03644 1853 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 736 919 IPR014001 -
Accr2g03644 1853 ProSiteProfiles ADD domain profile. 470 602 IPR025766 -
Accr2g03644 1853 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 968 IPR027417 -
Accr2g03644 1853 MobiDBLite consensus disorder prediction 1519 1544 - -
Accr2g03644 1853 Coils Coil 1731 1751 - -
Accr2g03644 1853 Coils Coil 1604 1624 - -
Accr2g03644 1853 PANTHER RAD54-LIKE 1472 1593 IPR044574 GO:0016887
Accr2g03644 1853 Coils Coil 47 81 - -
Accr2g03644 1853 MobiDBLite consensus disorder prediction 1 46 - -
Accr2g03644 1853 Coils Coil 1350 1370 - -
Accr2g03644 1853 MobiDBLite consensus disorder prediction 1646 1671 - -
Accr2g03644 1853 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1123 1291 IPR001650 -
Accr2g03644 1853 MobiDBLite consensus disorder prediction 1307 1331 - -
Accr2g03644 1853 Coils Coil 98 125 - -
Accr2g03644 1853 SUPERFAMILY FYVE/PHD zinc finger 523 584 IPR011011 -
Accr2g03644 1853 MobiDBLite consensus disorder prediction 1392 1417 - -
Accr2g03644 1853 SMART helicmild6 1146 1243 IPR001650 -
Accr2g03644 1853 CDD ADDz_ATRX 478 576 - -
Accr2g03644 1853 Pfam Helicase conserved C-terminal domain 1119 1243 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03644 Accr-Chr2 71835030 71863143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03644 778 1296 RAD5 or RAD16-like Gene Family AT5G22750 25.901 6.07e-31 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr2g03644 SNF2_N 6.6e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03644 K10779 - gmx:100794911 2130.91