LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g03496	ATGAGTCGCCGGTCCAGTCGCACCATCTATGTTGGCAATCTTCCTGGTGATATTCGCTTGAGAGAAGTAGAGGATCTTTTTTACAAGTATGGTCCCATTGTTGACATTGATTTAAAAATCCCTCCAAGACCACCTGGTTATGCTTTTGTCGAGTTTGAAGATCCTCGTGATGCTGAAGATGCAATTCATTATCGAGATGGATACAATTTTGATGGTTTTCGTTTGCGGGTCGAACTCGCACATGGTGGGCGCGGATCCTCATCAGACCGCTACAGTAGCTACAGTTCTAGAGGTGGTAGTAATGGAGTTTCCAGGCGCTCTGACTATCGCGTTATGGTCACTGGATTACCTCCTTCGGCTTCCTGGCAAGACTTGAAGGATCACATGCGTAGAGCTGGTGATGTGTGTTTCTCTCAAGTCTTCCGTGAACGTGGTGGCATGACTGGGATAGTGGATTATACAAACTATGAAGATATGAAATATGCTATTAGGAAGCTTGATGACTCAGAATTCCGCAATGCCTTCTCTCGTGCATATATACGGGTCAGGGAATATGATCGGAGTTACTCTCAGAGTCCTAGTCGTGATTCAAGGAGAAGCTATTCTAGAAGTCGTAGCCGCAGTCCCTACATGAGTCGAAGTCCTAGCTACAGTGACAGGAGCCGAAGCTTGTCTCCAAAGGTAAAACGTTCACGGCGATCATTATCAAGATCTCGGTCAAGATCCAGATCAGCAAATTCATCTTCTCCACGTTACAAGAGTCGCAGTCCTAGCCGAACGCCTAGAGGCTCATCAAAATCACGTTCACCTTCAGTGAGATCTGAGAGTAGCAGATCTGTCGAATCTGGAGATCGTTGA	858	0.4627	MSRRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEDAIHYRDGYNFDGFRLRVELAHGGRGSSSDRYSSYSSRGGSNGVSRRSDYRVMVTGLPPSASWQDLKDHMRRAGDVCFSQVFRERGGMTGIVDYTNYEDMKYAIRKLDDSEFRNAFSRAYIRVREYDRSYSQSPSRDSRRSYSRSRSRSPYMSRSPSYSDRSRSLSPKVKRSRRSLSRSRSRSRSANSSSPRYKSRSPSRTPRGSSKSRSPSVRSESSRSVESGDR	285

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g03496	285	MobiDBLite	consensus disorder prediction	240	277	-	-
	Accr2g03496	285	MobiDBLite	consensus disorder prediction	86	103	-	-
	Accr2g03496	285	FunFam	ASF/SF2-like pre-mRNA splicing factor SRP31	1	108	-	-
	Accr2g03496	285	CDD	RRM2_SF2_plant_like	109	184	-	-
	Accr2g03496	285	MobiDBLite	consensus disorder prediction	186	203	-	-
	Accr2g03496	285	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	82	IPR000504	GO:0003723
	Accr2g03496	285	SMART	rrm1_1	8	78	IPR000504	GO:0003723
	Accr2g03496	285	SMART	rrm1_1	110	179	IPR000504	GO:0003723
	Accr2g03496	285	MobiDBLite	consensus disorder prediction	204	222	-	-
	Accr2g03496	285	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	109	187	IPR000504	GO:0003723
	Accr2g03496	285	MobiDBLite	consensus disorder prediction	82	105	-	-
	Accr2g03496	285	MobiDBLite	consensus disorder prediction	186	285	-	-
	Accr2g03496	285	SUPERFAMILY	RNA-binding domain, RBD	5	176	IPR035979	GO:0003676
	Accr2g03496	285	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	76	IPR000504	GO:0003723
	Accr2g03496	285	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	111	173	IPR000504	GO:0003723
	Accr2g03496	285	PANTHER	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	5	271	-	-
	Accr2g03496	285	Gene3D	-	2	108	IPR012677	-
	Accr2g03496	285	Gene3D	-	109	186	IPR012677	-
	Accr2g03496	285	FunFam	serine/arginine-rich splicing factor SR34A-like	109	186	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g03496	Accr-Chr2	70495050	70499778	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g03496	3	80	Eukaryotic Initiation Factors Gene Family	AT3G11400	32.099	3.04e-06	46.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g03496	K12890		-	gmx:100794282	328.561