Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03459 ATGGTAAGGGGGGGGAAGGTTGGTGGCAAACGCAGTTTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGTTCTGATGATTCGGATGAGGACTATGTGGTTCCAGATGAAGTTAGAGAAATATCTGATTGTTCCGAGGATTCATTGTTTTCTTTAGATGGATGTGAATCCGAGGAGAGTTTTGATAGCTTTGTAGAGGATGAGGACGAGGAGGAAATTGAAGTAAGGAGGAAATTCAATAGATCCAAGACAAAAAATGGCATTTGTGGTCGGCAGAAAAATGGCAGGAAACCCTCACAACAGAGAGGAAGGATAACTTACTCACATCAACTAGAAGAAGAAGAAGAATACAAAGAACAAGAACAAGAACAAGAAAAAGAAGAGGAAGGTGATGAAGAGACAGATGAATATGAGGAAGATGATGCCGACGAAGATTTTGATTGTGATGAGGATGAGGATGAGGAATTTACACCTGAGGAAGAAGATTACTCAGATGAGGAAGAAATAAAAGGGAGAAAAAAGAAAAGTAACGGCATAAAGATGGGCAAGAAGGCTGTTCAGAAGTTGGCCTCTGTAACTTATACTAGAGGTCGTAAAAGAAGGAATTCTAGACCTGCAAGGAAGTCCTTGAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAGGAGGAAAACAAAGTATGATGATGAGGGTGATTTTATAGATCATGGTCCTACCATCAGAACCAAGAGTAAGAAAAATCCAGGACGAAAAAGGAGAAGACAAATCGTTGATTCAGATTCACACTCAGATTGTATGTTATCTAGGTCATCTGATTATGAGTATACCATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGAAGATTGAGAACTAATTTGAGGAGTTCATCCCTTCTGACAAAAAATGAAGAGGATGGAGTCCATGAAGAACTACAGAAGCAAAGAAAGCCTCCAGCCCGAAAAGGTAAGGAAAAGATAGAGGAACATCAGGCGAGAAAGGGCAAGGACAAGGTAGAGGATTTAAAAAGTGAGCCAGTAAAGCAGGTGTGTGGTATTTGTCTCTCTGAAGAAGATAAAAGAAGAGTAAGAGGAGTACTAGATTGTTGCACACACTTTTTCTGTTTTGCTTGCATTATGGAGTGGGCAAGAGTGGAATCTCGCTGCCCTTTGTGCAAGCAGAGATTTAAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGGAGTTGATTTGAGAGGGTCAGTTATACAAGTCCCCGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTATTTTGTTCAGAGTGCCATCAAGGTGGAGACGATGATCTCATGTTATTGTGTGATCTCTGTGACTCTCCTGCACACACATATTGTGTTGGTCTGGGTCGTGAAGTACCTGAAGGCAATTGGTATTGCGATGGTTGTAGGCCAGTTGCTTTGGGATCTTCAAGTTCTCAAGCTAAGGAAGGTGCGGCTGATTCAAGGGCAGCAACAGGTCAGAGCCTACCTGGTAGACCATCGCCTGCTGTACATGCAAGAGAAGCTATTGACCTCAACTTGATGTCTTCACCGCGTGCAGCTTTTAGTCAAGGATTTGGGAATTTTTCTTCTAGATTTTCTGGTAGAAGTGTTGAAGGAGCTTCTCCAGTGTCTGGAGGAGGGGCTCCGACTTTATCTGAGAGACGTTGGATACACCGTCAAATTCAACAATTGCTTTCATTGGATAGAATGACTTCTGCTGCCGGTCGATCTAATGGCATTTCAGCTACTAATTCAACTAGTAACCTATATGGCTCTCAAAATGATCAAAGTAGGTTAACAGCCACTCAAGACACAAGGACACAGAACGTGGGAACATCGTCATATCACTCATTTTTTGAGGAAAGATTACGCAACAGCACCTCTCCACTGATGCAGAATGGGGATCATTTCTCTATGAGAATAAGCAATTCTAGAAGGCCAGTAGTTCAAGATTCAGCTCCATTCACCAACAGAGCTGTGAATGGGGCATTTTGGCCTGGTCCTGTGGGGACACCTCCTGTATCAGATTATGTACAAGTGCATCAGCTTAGCAGCAGTTCACACATTGTTGCTGATGGAAGTGTGTCCCCTGCTATTAGAGAAGATGGTAACTTTCACATAGTAAAGGAACAATTGTCGTCATTGGTTAAACGCCACCTTATGGGCTTGTCACAAAATATTGATTTGGGCAACAGTACCTACAAGGACATTGCAAGGATTTCTCTGAACACCATACTAGCAGCTTGTGGCCTTGAGCACAAGAAGAGCGACGTTTGTGCGGTGCCTCCTCCTTCAGCCTGTCCTCACATTGAACTAATGGCTGGTGGGCAAACGAGTCTTATTAAAGGTTGCTGCTCATCCTGCTTCGATTCTTTCGTAAGGGATGTGGTTAAGAGGATCATGGACACAAGAATGTCGCAGTGGTTGCGACTAGGCCTTTAG 2511 0.4317 MVRGGKVGGKRSFRKRVRSKEGGSDDSDEDYVVPDEVREISDCSEDSLFSLDGCESEESFDSFVEDEDEEEIEVRRKFNRSKTKNGICGRQKNGRKPSQQRGRITYSHQLEEEEEYKEQEQEQEKEEEGDEETDEYEEDDADEDFDCDEDEDEEFTPEEEDYSDEEEIKGRKKKSNGIKMGKKAVQKLASVTYTRGRKRRNSRPARKSLRKKRRKNGGLRRKTKYDDEGDFIDHGPTIRTKSKKNPGRKRRRQIVDSDSHSDCMLSRSSDYEYTISEEEREQVREAEELCGRLRTNLRSSSLLTKNEEDGVHEELQKQRKPPARKGKEKIEEHQARKGKDKVEDLKSEPVKQVCGICLSEEDKRRVRGVLDCCTHFFCFACIMEWARVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIQVPERDQVYQPSEEELRSYIDPYEYVFCSECHQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQAKEGAADSRAATGQSLPGRPSPAVHAREAIDLNLMSSPRAAFSQGFGNFSSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSLDRMTSAAGRSNGISATNSTSNLYGSQNDQSRLTATQDTRTQNVGTSSYHSFFEERLRNSTSPLMQNGDHFSMRISNSRRPVVQDSAPFTNRAVNGAFWPGPVGTPPVSDYVQVHQLSSSSHIVADGSVSPAIREDGNFHIVKEQLSSLVKRHLMGLSQNIDLGNSTYKDIARISLNTILAACGLEHKKSDVCAVPPPSACPHIELMAGGQTSLIKGCCSSCFDSFVRDVVKRIMDTRMSQWLRLGL 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03459 836 SMART ring_2 354 395 IPR001841 -
Accr2g03459 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 414 IPR013083 -
Accr2g03459 836 MobiDBLite consensus disorder prediction 115 164 - -
Accr2g03459 836 MobiDBLite consensus disorder prediction 305 342 - -
Accr2g03459 836 MobiDBLite consensus disorder prediction 220 240 - -
Accr2g03459 836 ProSitePatterns Zinc finger RING-type signature. 373 382 IPR017907 -
Accr2g03459 836 CDD RING-HC_Topors 352 399 - -
Accr2g03459 836 Coils Coil 106 130 - -
Accr2g03459 836 SUPERFAMILY FYVE/PHD zinc finger 417 493 IPR011011 -
Accr2g03459 836 MobiDBLite consensus disorder prediction 193 219 - -
Accr2g03459 836 Coils Coil 276 296 - -
Accr2g03459 836 MobiDBLite consensus disorder prediction 301 342 - -
Accr2g03459 836 ProSiteProfiles Zinc finger RING-type profile. 354 396 IPR001841 -
Accr2g03459 836 MobiDBLite consensus disorder prediction 84 105 - -
Accr2g03459 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 495 IPR013083 -
Accr2g03459 836 MobiDBLite consensus disorder prediction 502 524 - -
Accr2g03459 836 Pfam PHD-finger 447 493 IPR019787 -
Accr2g03459 836 PANTHER F18C1.6 PROTEIN 1 827 - -
Accr2g03459 836 MobiDBLite consensus disorder prediction 1 279 - -
Accr2g03459 836 Pfam Ring finger domain 353 396 IPR001841 -
Accr2g03459 836 SUPERFAMILY RING/U-box 353 402 - -
Accr2g03459 836 ProSiteProfiles Zinc finger PHD-type profile. 445 494 IPR019787 -
Accr2g03459 836 SMART PHD_3 447 492 IPR001965 -
Accr2g03459 836 MobiDBLite consensus disorder prediction 599 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03459 Accr-Chr2 70190305 70193249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03459 442 491 C2H2 Transcription Factor Family AT3G01460 48.077 1.14e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr2g03459 PHD 4.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03459 - - gmx:100791422 885.56