Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03440 ATGGACCATGTTTACAGGTTGAACACGAAGGAATCTTCCCGTTCCGATGATGTCAGAGTTGGTGACGTCGCTCGTTCTTCAGATCATCGCTTGCATCGTGCTCCGGTGGCTAATAACTACGTACGGATGCAAGTGCCTGATTCCGAAAGAACTGGGTCTGACGACGTGCCTGAGCCGGACCAGTTCATCAAGACCCAAATCGCCAGTCACCCGCTTTATCCTAATTTATTATCTGCTTACATTGAATGCCAAAAGGTCGGAGCTCCACCAGAACTGGCGTCCCTTCTGGAAGAAATGAACCGAGAAAATCACCCAATCAGTGCTCAGCGTCAGATAGTGGACGATCCTCAACTTGACGACTTCATGGAATCATACTGCGAGGTTCTTCGTAGATACAGAGAGGAGTTGTCCAGGCCCTTCAACGAAGCGACCTTGTTTTTGAGCAATATCGAATCTAAGCTCCAAAACATCTGCAAAGGAACATTAAAAAATTCAACGGGATGTCAATCCGAGGAGGCAGGTGTGAGTTCAGAAGAAGAACCAAGTTATGGTGAGGGGGAAGGTGATGTATCTTGTGGCAGTTGCCAAGCTGATAAAGAGATCAAAGAAATGCTTCTTCGCAAGTACAGTGGCTATCTCAGCAATCTGCGGAAGGAGTTCTTGAAGAAAAGGAAAAGTGGGAAGCTTCCTAAAGATGCCAGGATCACACTCCTCAACTGGTGGAACACTCACTACAGATGGCCTTATCCCACGGAGGAAGAGAAAGTGAGGCTATCGGAAATGAGTGGACTGAATCAAAAGCAGATAAATAATTGGTTCATCAATCAGAGGAAACGCCACTGGAAGCCATCTAACGATATGCGATTTGCCGTCTTGGAGGGTGTAAGTGGGGCCCCCTTCGGACCCCCTTGCTGCTTCAAAGCTACTCCACCACCTCAACCTCATTGA 948 0.4768 MDHVYRLNTKESSRSDDVRVGDVARSSDHRLHRAPVANNYVRMQVPDSERTGSDDVPEPDQFIKTQIASHPLYPNLLSAYIECQKVGAPPELASLLEEMNRENHPISAQRQIVDDPQLDDFMESYCEVLRRYREELSRPFNEATLFLSNIESKLQNICKGTLKNSTGCQSEEAGVSSEEEPSYGEGEGDVSCGSCQADKEIKEMLLRKYSGYLSNLRKEFLKKRKSGKLPKDARITLLNWWNTHYRWPYPTEEEKVRLSEMSGLNQKQINNWFINQRKRHWKPSNDMRFAVLEGVSGAPFGPPCCFKATPPPQPH 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03440 315 ProSitePatterns 'Homeobox' domain signature. 258 281 IPR017970 GO:0000981|GO:0006355
Accr2g03440 315 Pfam Homeobox KN domain 240 279 IPR008422 GO:0003677|GO:0006355
Accr2g03440 315 Pfam KNOX1 domain 63 104 IPR005540 GO:0003677|GO:0005634
Accr2g03440 315 Gene3D - 218 290 - -
Accr2g03440 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 65 289 - -
Accr2g03440 315 SMART HOX_1 222 287 IPR001356 GO:0003677
Accr2g03440 315 Pfam ELK domain 200 221 IPR005539 GO:0003677
Accr2g03440 315 CDD homeodomain 223 284 IPR001356 GO:0003677
Accr2g03440 315 SUPERFAMILY Homeodomain-like 222 291 IPR009057 -
Accr2g03440 315 ProSiteProfiles 'Homeobox' domain profile. 220 283 IPR001356 GO:0003677
Accr2g03440 315 SMART KNOX2_2 108 159 IPR005541 GO:0003677|GO:0005634
Accr2g03440 315 MobiDBLite consensus disorder prediction 165 189 - -
Accr2g03440 315 SMART KNOX1_2 61 105 IPR005540 GO:0003677|GO:0005634
Accr2g03440 315 SMART ELK_2 200 221 IPR005539 GO:0003677
Accr2g03440 315 ProSiteProfiles ELK domain profile. 200 220 IPR005539 GO:0003677
Accr2g03440 315 Pfam KNOX2 domain 112 158 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03440 Accr-Chr2 70052861 70056140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03440 19 300 Homeobox Transcription Factor Family AT1G23380 47.931 1.07e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Accr2g03440 KNOX2 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03440 - - gmx:102660463 376.711