Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03396 ATGCCTCTTTACGAGTTATACAGAATGACTAAAGCGAAGCTTGATTCTCAAGAGAAAGACAACACATATGCAACCGATCAATCTTCCTCACCGGAGAATGACTTTTTTGAGTTGGTTTGGGAAAATGGTCAGATTTCGATGCAGGGTAAGTCAAGCAGAGCAAGAAAGAGCCCAGTACATAAGAGTCTTCCATCTCACAGCTTACCATCTCACAGTCCAAGGACTCAATACAAAGATGTCGGATTTAGTATCGATACAAGGATGGGAAAGTTAGGGCATTTAGACTCTGGATTAAATGAAATTCCGATATCTGTTCCTTCGGATGAAATGAATTTGAGTCAAGATGAAGACATGATACCTTGGTTAAATTATCCAATGGATGACTCTTTACAACATGAATATAGTTTTGATTTCACGCGTGATGTCTCTGGGGTCACCGTAAATGAGTTCCCATCTACCTCAAATAATTTTGCCCTGATGGATAAGAGAAGTAGCGGCAATCAGGTATACAAGGACTCCATCAGAAGTCCTGTGCCTGGTGTTTCAAGTTCAGAACAAGCAATTATTACCAAGGGATCTTCAAACGGAGAAGTTGAGCCTAGTGGGCCGAAGGGAAACAACAGCCATTTATACCCACCATCATTGCAGCAATGTCAAACATCATTTGCATCCAGTAGACCCAAAATATCAGATAGCACTGAAAATAATACAAGTAATGCAATACTGCAAGCACCTTGCGGGGAAATCACTCAGACTCCATCTTCCTCTAGTGGTTTTTGTAGTCTAAATATGCAGAAACATGATCCTTTATGTCCTAGGAGTAGTTCTAACATGATGAATTTCTCCCATTTTGCAAGACCTGCCGCCATTGTGAGAGCTAATCTTCAGAGCATCAGTATGATGTCTGGTTTATGTTCAGCAAGATCAGAAAGCTTGGGAACGAGGAAAAAAGATGTTGATGCAAGTAGCAGCAACCCTCCTGAATCAACACTCATTGATTTAAATAATCAAAAGAACTGCCAGAAGCTGGTCATAGACACATCAAAGGCTGAGTTGAAACCAGCCAATCCAAAATCTCTCGGACAGAAGGCTGATTTTGCAAATCAGTTTGACCCTCCTTGCAAGGAGGATGGTGCACGTAAGAATAATCAAATTTCTGATCAAGTTCCCACGGGAAGTGGTGATAAAGGACAACCAGCTGTTGAAAAAAGCATTAACCCTGAAGTAGCCTCTTCCTCCGTTTGCTCAGGAAATGGTGTGAAGAGAGGTTCAGATAATGCAAATAAGAATTTGAAGCGAAAAAGTCAAGATACTGAAGACTCTGAGTGTCAAAGTGAAGAAGTTGAGGAAGAATCAGTGGGCATTAAAAAGGTAGCTCCTGCTCGAGGTACAAGTTCTAAGAGAAGTCGTGCCGCTGAAGTGCATAATCTATCGGAAAGGAGGCGGAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGAACTCATCCCAAACTGCAATAAGGTGGATAAAGCATCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAACTCCAAGTTCAAATCATGTCAATGGGAGCTGGTCTATATGCGCCCCCTAATCCAATGATGTTACATCCAGGAATGCAGCACATGCAGACACCACATATGGCTTCATTCTCACCCATAGGAATTGGCATGCAAATGGGGTTTGGAATGGGTTATGGGATGAGCATGTCTGACATGAATAGTGGATCCCCTAGATTCCCAATGGTTCAGGTGCCCCAAATGCAAGGAACTCATTTCCCTGTTTTACCTATGCCTGGACCCACGGCTGTTTTACATGGGATGCCAAGATCAAGTCCTCAGGTATTTGGGTTTCCTAGTCAGGGACTTTACATGCCAATGCCAAATGCTCCAGGAGTTTCTATGCCAGGAGGGCCCCTTATGAACCCTTCGAGTTCAGGACAGAACGCCTTTGGGGCTGCAGGACTTAGGGAAACTGTTGATTCAGCTTCAGCCTCTAGTTTAAAGGAACCAATGCCAAATGTGAATTCACAGGTTATGCCAAGCACAGGTGGCAGTAACTCCACAGTGCAGATATCTACTCAGTGTGAAGCAATGAATGTTGGAATTGATCAGACACCACCGGTGCAAACTAGCGGGCATACCTCCAATATTAATGACAGTGGAACAACAAATCCTGGCAAAGAAGATAACCTTGTTATTGGTAATGACTGA 2229 0.4298 MPLYELYRMTKAKLDSQEKDNTYATDQSSSPENDFFELVWENGQISMQGKSSRARKSPVHKSLPSHSLPSHSPRTQYKDVGFSIDTRMGKLGHLDSGLNEIPISVPSDEMNLSQDEDMIPWLNYPMDDSLQHEYSFDFTRDVSGVTVNEFPSTSNNFALMDKRSSGNQVYKDSIRSPVPGVSSSEQAIITKGSSNGEVEPSGPKGNNSHLYPPSLQQCQTSFASSRPKISDSTENNTSNAILQAPCGEITQTPSSSSGFCSLNMQKHDPLCPRSSSNMMNFSHFARPAAIVRANLQSISMMSGLCSARSESLGTRKKDVDASSSNPPESTLIDLNNQKNCQKLVIDTSKAELKPANPKSLGQKADFANQFDPPCKEDGARKNNQISDQVPTGSGDKGQPAVEKSINPEVASSSVCSGNGVKRGSDNANKNLKRKSQDTEDSECQSEEVEEESVGIKKVAPARGTSSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYAPPNPMMLHPGMQHMQTPHMASFSPIGIGMQMGFGMGYGMSMSDMNSGSPRFPMVQVPQMQGTHFPVLPMPGPTAVLHGMPRSSPQVFGFPSQGLYMPMPNAPGVSMPGGPLMNPSSSGQNAFGAAGLRETVDSASASSLKEPMPNVNSQVMPSTGGSNSTVQISTQCEAMNVGIDQTPPVQTSGHTSNINDSGTTNPGKEDNLVIGND 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03396 742 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983
Accr2g03396 742 Coils Coil 431 451 - -
Accr2g03396 742 MobiDBLite consensus disorder prediction 670 694 - -
Accr2g03396 742 MobiDBLite consensus disorder prediction 405 425 - -
Accr2g03396 742 MobiDBLite consensus disorder prediction 426 441 - -
Accr2g03396 742 MobiDBLite consensus disorder prediction 709 742 - -
Accr2g03396 742 MobiDBLite consensus disorder prediction 318 333 - -
Accr2g03396 742 CDD bHLH_AtPIF_like 470 532 IPR047265 -
Accr2g03396 742 Gene3D - 465 528 IPR036638 GO:0046983
Accr2g03396 742 PANTHER TRANSCRIPTION FACTOR PIF3 1 696 IPR044273 GO:0003700|GO:0006355
Accr2g03396 742 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Accr2g03396 742 SMART finulus 476 525 IPR011598 GO:0046983
Accr2g03396 742 MobiDBLite consensus disorder prediction 314 333 - -
Accr2g03396 742 MobiDBLite consensus disorder prediction 709 736 - -
Accr2g03396 742 MobiDBLite consensus disorder prediction 192 214 - -
Accr2g03396 742 FunFam Basic helix-loop-helix transcription factor 465 528 - -
Accr2g03396 742 MobiDBLite consensus disorder prediction 46 76 - -
Accr2g03396 742 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 532 IPR036638 GO:0046983
Accr2g03396 742 MobiDBLite consensus disorder prediction 351 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03396 Accr-Chr2 69587730 69591873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03396 1 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.838 9.34e-75 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr2g03396 HLH 8.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03396 K12126 - gmx:100794974 747.658