Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03353 ATGGGTAAAGCCTCTAGCTCTTCTTCTTCCTCTATCAGCAGCAACAACCACCCACTCATTTCAACTGCTTCATCTCTCACCCGCCTCCATAGCTCTGATTACCTTCCCACAGATCTCAGGCTTGGTCTTAGCATTTCAGCAACCCAACATGTTGGCTCTTCTGTTTCAAGGGGGCAACCAACAGATTGGATCCCAAACCAGCGTGGTTATGGGGTGGAAGGAAATGATTGTGGGGATCACAGCAGCATGTTTGTAAAGGTGTACATGGAAGGCATTCCAATAGGAAGGAAACTCAATCTGGTAGCTCACGAAAGCTACCATGAGTTAGTGAGGACTTTGGAAAACATGTTTGACACTACCATTCTCTGGGGGACAGGGATGGATGGGGTGCAACCAGAGAGGTGCCACGTGCTAACATACGAAGACGAAGAAGGAGATTTGGTGATGGTGGGCGATGTTCCTTGGGAAATGTTCCTATCAACAGTGAAGAGATTGAAGATAACGAGGGTAGACGCATTCGGGTGTTAA 528 0.4773 MGKASSSSSSSISSNNHPLISTASSLTRLHSSDYLPTDLRLGLSISATQHVGSSVSRGQPTDWIPNQRGYGVEGNDCGDHSSMFVKVYMEGIPIGRKLNLVAHESYHELVRTLENMFDTTILWGTGMDGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDAFGC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03353 175 Gene3D - 77 174 - -
Accr2g03353 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Accr2g03353 175 Pfam AUX/IAA family 79 169 IPR033389 -
Accr2g03353 175 SUPERFAMILY CAD & PB1 domains 79 167 - -
Accr2g03353 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 36 170 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03353 Accr-Chr2 69175549 69176356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03353 86 167 B3 DNA Binding Superfamily AT4G23980 39.024 7.03e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr2g03353 AUX_IAA 1.1e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03353 K14484 - gmx:100781660 251.906
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g03353 2 69175549 69176356 Accr5g02752 5 53439168 53439982 CCT