Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03297 ATGTCGAAACGAAAGTTCGGGTTCGAAGGCTTTGGCATCAACCGCCAATCGACCTATAATTTTGAGAGATCTCAAGCTCCTCAGCGACTGTATGTTCCTCCTTCATCACGTCACGGGCATGACAATTACGAAGACACCGACCTTGACAACATCGAATATGACGATAATGATGCTCCCAAAGACGGAAACGATGGCAACAGCGACGATATTGATCCCCTTGATGCTTTCATGGAAGGGATTCACGAGGAAATGAGAGCCGCGCCACCTCCGCAGCCGAAAGAGAAGTCAGAGGACAGGTATAGAGATGATGACGAGGACGACCCGATGGAGAGTTTCTTGAGGGCGAAGAAGGACGTAGGGTTGACCTTGGCATCCGAGGCTCTGCAAGCTGGGTATGACTCCGATGAAGAGGTTTATGCAGCTGCAAAAGCTGTAGACGCGGGAATGATAGAGTATGACTCTGATGACAACCCCCTTATTGTTGACAAGAAGAAAATTGAGCCTATTCCTGCTTTGGACCACAGTTCTATTGAGTACGAGCCCTTTAACAAGGATTTTTACGAGGAGAATCCTTCAATATCAGGTATGAGCGAGCAAGATGTTGCTGAATACAGGAAGAGCTTGGCCATTCGTGTATCAGGTTTTGATGTTCCAAAGCCAATTAAGACGTTTGAAGACTGTGGTTTCCCTCCACAACTTATGAATGCCATAAAGAAGCAAGGCTACGAGAAACCTACGTCAATACAATGCCAAGCTTTACCAGTTGTGCTCTCTGGCAGTGATATAATCGGTATAGCGAAAACTGGTTCTGGTAAAACTGCTGCCTTTGTCCTTCCCATGATTGTGCATATCATGGATCAGCCTGAACTTCAGAAGGAAGAAGGTCCAATAGGAGTAATTTGTGCTCCCACTAGAGAACTGGCGCATCAGATATACTTGGAGGCCAAGAAATTTGCAAAACCCTATGGCTTACGTGTCTCTGCTGTCTATGGTGGAATGTCAAAACTGGATCAGTTCAAAGAACTCAAGGCAGGCTGTGAGATAGTTGTTGCTACCCCTGGCAGATTGATAGACATGCTGAAAATGAAGGCAGTTACAATGATGAGAGCAACTTACTTGGTGCTTGATGAGGCTGATAGGATGTTTGACCTTGGGTTTGAGCCACAAGTAAGGTCCATTGTTGGTCAGATCAGGCCTGATCGCCAAACTTCACTTTTTTCTGCAACAATGCCTCGTAAAGTTGAAAAGTTGGCCAGGGAAATTCTTAGTGATCCTGTTAGAGTGACTGTTGGGGAGGTTGGAATGGCAAATGAAGACATTACTCAAGTTGTTCAAGTGATTTCTTCTGATACTGAGAAAATGCCATGGCTCCTTGAGAAGCTGCCTGGAATGATTGATGAAGGTGATGTCTTAGTATTTGCTTCCAAAAAGGCTACTGTGGATGAAATTGAATCACAACTGTCACAAAGAAGCTTTAAAGTGGGAGCTCTGCATGGCGATAAAGATCAAGCTTCTCGAATGGATATCTTGCAGAAGTTTAAATCTGGTTCCTACCATGTTCTTGTTGCGACTGATGTTGCTGCCCGTGGTCTTGACATCAAATCAATTAAGTCAGTGGTCAACTTTGATATTGCAAAAGACATGGATATGCATGTACATCGCATTGGCAGAACAGGTCGTGCTGGTGACAAAGATGGGGTTGCATACACTCTTATAACTCAGAAAGAAGCACGCTTTGCTGGTGAGCTGGTTAATAGCTTAATAGCAGCTGGACAGAATGTGTCTACGGAGTTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCAAGGAAAGGAGGTGGGAGAAAAAGTAAAGGAAGGGGAGGGGGTGGCGGTAGAGGTGTGCGGGGTGTGGATTATGGCTTGGGTATTGGATACACTCCGGAGTCCAATAACCCGCCACCTAGCACAACAAGTCGATCTGCTGCTGTAAACTCACTGCGGACAGGGATGATGGCACAATTTAGGAGCAACTTTGTTGCTGCTTCATCAGACTCTCAAAACCAAAGCTTCGGTAACAGTACAAGTATGCCTGCTAATAAGAGGCCCGCCCTCGCTGGCTTCGTATCTGGTGGGTCAATTGGTGGCGATGTAAATAATAATCAGACTCCTGCTTCATCCAGACCAGCTACTTCGGCTGTAAATGCTAATAGTCACAACTCTGGAGTTGATGCTGGTCAGAGGAATACCGACAGCTCCAGGCCTCGAGAAAGGAGGAGACAGTCAGGTTGGGACAGGTAG 2295 0.4606 MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIEYDDNDAPKDGNDGNSDDIDPLDAFMEGIHEEMRAAPPPQPKEKSEDRYRDDDEDDPMESFLRAKKDVGLTLASEALQAGYDSDEEVYAAAKAVDAGMIEYDSDDNPLIVDKKKIEPIPALDHSSIEYEPFNKDFYEENPSISGMSEQDVAEYRKSLAIRVSGFDVPKPIKTFEDCGFPPQLMNAIKKQGYEKPTSIQCQALPVVLSGSDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFAKPYGLRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKAVTMMRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTSLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVQVISSDTEKMPWLLEKLPGMIDEGDVLVFASKKATVDEIESQLSQRSFKVGALHGDKDQASRMDILQKFKSGSYHVLVATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLIAAGQNVSTELMDLAMKDGRFRSKRDARKGGGRKSKGRGGGGGRGVRGVDYGLGIGYTPESNNPPPSTTSRSAAVNSLRTGMMAQFRSNFVAASSDSQNQSFGNSTSMPANKRPALAGFVSGGSIGGDVNNNQTPASSRPATSAVNANSHNSGVDAGQRNTDSSRPRERRRQSGWDR 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03297 764 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 428 IPR014001 -
Accr2g03297 764 SMART helicmild6 481 562 IPR001650 -
Accr2g03297 764 MobiDBLite consensus disorder prediction 683 764 - -
Accr2g03297 764 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 189 602 - -
Accr2g03297 764 MobiDBLite consensus disorder prediction 1 108 - -
Accr2g03297 764 MobiDBLite consensus disorder prediction 605 660 - -
Accr2g03297 764 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 457 602 IPR001650 -
Accr2g03297 764 CDD DEADc_DDX42 233 429 - -
Accr2g03297 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 431 IPR027417 -
Accr2g03297 764 Gene3D - 430 606 IPR027417 -
Accr2g03297 764 Gene3D - 185 429 IPR027417 -
Accr2g03297 764 CDD SF2_C_DEAD 440 572 - -
Accr2g03297 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 602 IPR027417 -
Accr2g03297 764 MobiDBLite consensus disorder prediction 74 108 - -
Accr2g03297 764 MobiDBLite consensus disorder prediction 683 698 - -
Accr2g03297 764 MobiDBLite consensus disorder prediction 53 67 - -
Accr2g03297 764 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 374 382 IPR000629 -
Accr2g03297 764 MobiDBLite consensus disorder prediction 712 747 - -
Accr2g03297 764 SMART ultradead3 241 443 IPR014001 -
Accr2g03297 764 MobiDBLite consensus disorder prediction 13 31 - -
Accr2g03297 764 Pfam Helicase conserved C-terminal domain 466 562 IPR001650 -
Accr2g03297 764 FunFam probable ATP-dependent RNA helicase DDX17 184 431 - -
Accr2g03297 764 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Accr2g03297 764 MobiDBLite consensus disorder prediction 748 764 - -
Accr2g03297 764 Pfam DEAD/DEAH box helicase 246 417 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03297 Accr-Chr2 68564924 68569108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03297 222 578 Eukaryotic Initiation Factors Gene Family AT3G13920 35.278 7.32e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03297 K12835 - gmx:100814854 1271.53