Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03279 ATGGAAGAAGTAGTTTTGTTGGTCGATGATTTGAAATTACTTTCCGCGACTGCTCGCTGCAGAATATGTCACGACGAAGAATTTGAGAGCTCCGAAAGCCTTGAAGCTCCCTGTGCTTGTTCTGGCACCGTTAAGTTTGCTCACAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAACACAACCTGTGAATTGTGTCTTCAGCAATATGAACCTGGATATACAGCAGTCCCAAAGAAATCTCAGATAAATGACGCGGCTATGACAATCAGAGATAGCCTGCAAATTCCAAGGGACGAAGAACCGTTAAGCGCTAGATCAGAGGGAGGTGAAGAAGGAGTGACTACAACAGAAGGAGATTACACAGAATGCACCTCTACTGCTGATAGAAGTGCTTCTTGCTGCCGATCACTGGCTTTATTTTTTACACTCGTTCTGCTTGTTAGACATCTTTTCGTGGTGCTAACGAGTGCAAAGGAAGATTACCCATTTTCACTTTTAACCGTGTTTATACTAAAAGCAAGCGGGATCATTCTACCCATGTACATAATAATGAGGGCGATAGGAGGCATATTTGGGACTATTCAACGTCACTACCAGGATTCTGACGACGACGCATCAATATCCGACAGTGAAGATGAAGATAGCGAACTGATTCATGATACCTTTGTTCCCCATCAATAA 687 0.4338 MEEVVLLVDDLKLLSATARCRICHDEEFESSESLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCELCLQQYEPGYTAVPKKSQINDAAMTIRDSLQIPRDEEPLSARSEGGEEGVTTTEGDYTECTSTADRSASCCRSLALFFTLVLLVRHLFVVLTSAKEDYPFSLLTVFILKASGIILPMYIIMRAIGGIFGTIQRHYQDSDDDASISDSEDEDSELIHDTFVPHQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03279 228 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Accr2g03279 228 SMART ringv_2 19 68 IPR011016 GO:0008270
Accr2g03279 228 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Accr2g03279 228 CDD RING_CH-C4HC3_MARCH 20 67 - -
Accr2g03279 228 MobiDBLite consensus disorder prediction 100 122 - -
Accr2g03279 228 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
Accr2g03279 228 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 197 IPR033275 -
Accr2g03279 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 77 IPR013083 -
Accr2g03279 228 MobiDBLite consensus disorder prediction 204 228 - -
Accr2g03279 228 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Accr2g03279 228 SUPERFAMILY RING/U-box 18 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03279 Accr-Chr2 68425363 68427781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03279 20 67 C3H Transcription Factor Family AT2G37950 40.816 2.49e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03279 - - gmx:100797029 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g03279 2 68425363 68427781 Accr5g02689 5 52913140 52915144 CCT
Accr2g03279 2 68425363 68427781 Accr2g03279 2 68425363 68427781 ECH