Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03220 ATGAGTAGACGGACAAGCAGGACTGTCTACGTTGGGAATTTGCCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTATTTGTCAAGTATGGACACATTACTCACATTGACTTGAAGGTTCCACCCAGACCCCCTGGTTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGTCATCGGTTACGGGTAGAGCCTGCACATGGTGGACGTGTTCATTCATCATCCAGAGATCGACATAGTAGTCACAGTAATGGTCGAGGTGGACGTGGGGTTTCTAGGCGCTCTGAGTACCGTGTACTGGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGAGGAAAGCAGGAGATGTTTGTTTTTCTCAAGTTTTTCATGATGGTAGAGGAACAACTGGGATTGTTGATTACACAAACCATGATGACATGAAATATGCTGTCAAGAAGCTTGATGACTCTGAGTTTCGGAACGCATTTTCCAGAGCTTATGTTCGGGTGAAGGAACATGATTCAAGGCGGGACTCCTCTAGAAGCCCTAGTCGTGGCCGTTCTTATTCTAGAGGGCGAAGTTATAGCCGCAGCCGTAGTTACAGTCGGGGGCGTAGTCTAAGCAAATCTCCAAAGGGTAAATCTTCTCAGCGTTCACCTGCTAGATCTGCTTCGAGATCTGTTTCACGCTCACGTTCTCACTCAAAGTCAAGGTCCCGCTCTTTGTCAGGATCACGATCAAGATCCAGATCTCCATTGCCTTTGCGTGATAGAAGTCCAAAAAAGAACAGTACCAGCAGAAGCCCGAGCAGGAGCAGGAGCCCAAGCCGGAGCAAGAGTTTGTCTCGGTGA 894 0.4765 MSRRTSRTVYVGNLPGDIREREVEDLFVKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRVHSSSRDRHSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRAYVRVKEHDSRRDSSRSPSRGRSYSRGRSYSRSRSYSRGRSLSKSPKGKSSQRSPARSASRSVSRSRSHSKSRSRSLSGSRSRSRSPLPLRDRSPKKNSTSRSPSRSRSPSRSKSLSR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03220 297 CDD RRM1_SF2_plant_like 8 78 - -
Accr2g03220 297 CDD RRM2_SF2_plant_like 111 186 - -
Accr2g03220 297 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 266 - -
Accr2g03220 297 SMART rrm1_1 112 183 IPR000504 GO:0003723
Accr2g03220 297 SMART rrm1_1 8 78 IPR000504 GO:0003723
Accr2g03220 297 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 110 - -
Accr2g03220 297 MobiDBLite consensus disorder prediction 80 110 - -
Accr2g03220 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Accr2g03220 297 Gene3D - 2 111 IPR012677 -
Accr2g03220 297 MobiDBLite consensus disorder prediction 184 198 - -
Accr2g03220 297 MobiDBLite consensus disorder prediction 279 297 - -
Accr2g03220 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Accr2g03220 297 MobiDBLite consensus disorder prediction 199 242 - -
Accr2g03220 297 FunFam serine/arginine-rich splicing factor SR34A-like 111 188 - -
Accr2g03220 297 MobiDBLite consensus disorder prediction 80 107 - -
Accr2g03220 297 MobiDBLite consensus disorder prediction 184 297 - -
Accr2g03220 297 SUPERFAMILY RNA-binding domain, RBD 5 180 IPR035979 GO:0003676
Accr2g03220 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Accr2g03220 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Accr2g03220 297 MobiDBLite consensus disorder prediction 243 257 - -
Accr2g03220 297 Gene3D - 112 188 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03220 Accr-Chr2 67887237 67892056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03220 8 195 Eukaryotic Initiation Factors Gene Family AT4G34110 23.858 2.77e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03220 K12890 - gmx:100796900 335.495