Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr2g03219 | ATGAGTAGACGGACAAGCAGGACTGTCTACGTTGGGAATTTGCCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTATTTGTCAAGTATGGACACATTACTCACATTGACTTGAAGGTTCCACCCAGACCCCCTGGTTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGTCATCGGTTACGGGTAGAGCCTGCACATGGTGGACGTGTTCATTCATCATCCAGAGATCGACATAGTAGTCACAGTAATGGTCGAGGTGGACGTGGGGTTTCTAGGCGCTCTGAGTACCGTGTACTGGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGAGGAAAGCAGGAGATGTTTGTTTTTCTCAAGTTTTTCATGATGGTAGAGGAACAACTGGGATTGTTGATTACACAAACCATGATGACATGAAATATGCTGTCAAGAAGCTTGATGACTCTGAGTTTCGGAACGCATTTTCCAGAGCTTATGTTCGGGTGAAGGAACATGATTCAAGGCGGGACTCCTCTAGAAGCCCTAGTCGTGGCCGTTCTTATTCTAGAGGGCGAAGTTATAGCCGCAGCCGTAGTTACAGTCGGGGGCGTAGTCTAAGCAAATCTCCAAAGGGTAAATCTTCTCAGCGTTCACCTGCTAGATCTGCTTCGAGATCTGTTTCACGCTCACGTTCTCACTCAAAGTCAAGGTCCCGCTCTTTGTCAGGATCACGATCAAGATCCAGATCTCCATTGCCTTTGCGTGATAGAAGTCCAAAAAAGAACAGTACCAGCAGAAGCCCGAGCAGGAGCAGGAGCCCAAGCCGGAGCAAGAGTGAGCTCTGA | 891 | 0.477 | MSRRTSRTVYVGNLPGDIREREVEDLFVKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRVHSSSRDRHSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNHDDMKYAVKKLDDSEFRNAFSRAYVRVKEHDSRRDSSRSPSRGRSYSRGRSYSRSRSYSRGRSLSKSPKGKSSQRSPARSASRSVSRSRSHSKSRSRSLSGSRSRSRSPLPLRDRSPKKNSTSRSPSRSRSPSRSKSEL | 296 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr2g03219 | 296 | CDD | RRM1_SF2_plant_like | 8 | 78 | - | - | |
Accr2g03219 | 296 | CDD | RRM2_SF2_plant_like | 111 | 186 | - | - | |
Accr2g03219 | 296 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 113 | 175 | IPR000504 | GO:0003723 | |
Accr2g03219 | 296 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
Accr2g03219 | 296 | SMART | rrm1_1 | 112 | 183 | IPR000504 | GO:0003723 | |
Accr2g03219 | 296 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
Accr2g03219 | 296 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 1 | 110 | - | - | |
Accr2g03219 | 296 | MobiDBLite | consensus disorder prediction | 80 | 110 | - | - | |
Accr2g03219 | 296 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 111 | 189 | IPR000504 | GO:0003723 | |
Accr2g03219 | 296 | MobiDBLite | consensus disorder prediction | 184 | 198 | - | - | |
Accr2g03219 | 296 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
Accr2g03219 | 296 | MobiDBLite | consensus disorder prediction | 199 | 242 | - | - | |
Accr2g03219 | 296 | MobiDBLite | consensus disorder prediction | 184 | 296 | - | - | |
Accr2g03219 | 296 | FunFam | serine/arginine-rich splicing factor SR34A-like | 111 | 188 | - | - | |
Accr2g03219 | 296 | MobiDBLite | consensus disorder prediction | 80 | 107 | - | - | |
Accr2g03219 | 296 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 5 | 266 | - | - | |
Accr2g03219 | 296 | Gene3D | - | 111 | 188 | IPR012677 | - | |
Accr2g03219 | 296 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 180 | IPR035979 | GO:0003676 | |
Accr2g03219 | 296 | Gene3D | - | 2 | 110 | IPR012677 | - | |
Accr2g03219 | 296 | MobiDBLite | consensus disorder prediction | 243 | 257 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr2g03219 | Accr-Chr2 | 67887230 | 67892056 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr2g03219 | 8 | 195 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.873 | 2.63e-06 | 47.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr2g03219 | K12890 | - | gmx:100796900 | 335.495 |