Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03185 ATGGAGTTTCAGGACGCTGTCAGTTTTGTGGTCCAAGGATCGTTACAGAAAAATCGAGTTTCTCACAAAGCAACAGAATCAGACGCCGTCACTTCCGGCCGGAAATGGAAGATCTTCTACCGGCCATCGTCGACTTTCGCTTCCAAAAAGAAACAGCCCCCCGAAGAATTTCTCTGCCCCATATTAGGGTCTCTCATGGCAGACCCCGTCATCGTCTCCTCAGGCCACACCTTCGAGCGAGTCTCTGTTCAAGCTTGTAAAACTATAAACTTCACACCCCGCCTCTCCGATGGCTCCACGCCCGATTTTTCTACCGTAATTCCCAACCTTGCCCTTAAATCTGCAATTGCTAAATGGTGCCACAACTCCGCCAACCTACTCCCCGAGCCGCCTGATGTAGCTTCTTCTGAGAAGTTCGTGCTTAGTCTGATGACGAGAAACCAGAAGACAGATTCAAGCATCCAGAACAAAACAGAATCGCAGAAGGTAGTAATCACAGAGGAAGAGCTGATTCAAGGAATGAAGGAGAACCCACCTGTGAATTTCAATCACGCAGCGACCGAGGTCAATCGACGGCCAGCTCATCCTTACTGGAACTCAGAGGAATCGGCGGGTTCCTCTCCTGCATCTCCGCCCATGCAACTCTCAACTCGACCAAGCTGCTATTCCTCTGCTTCATCCTCAGAAATCGAAGTCATTGTTCATTGCTCCCCTGAAGAAGAGAACATCTTAGCCAAGCTAAGAAGCTCACAAGTGTCTGAGATCGATGAAGCCGCTATTTCACTAAGAAAGCTCACCAAGACTAGAGAGGATACCAGGGCCCAAATCTGCAGTCCTCGGTTACTCTCTGTCCTTCGATCGTTGGTCGTGTCCAAGTACGCTAATATTCAGGTGAACGCGGTCGCAGCTCTGGTGAATCTCTCATTGGAGAAAGTGAACAAAGTAAAGATACTCCGCTCCGGAATCGTTCCTCCCTTGGTTGACGCATTGAAAGGAGGATGTCCTGAGGTGCAGGAACACGCTTCCGGCGCAATCTTCAGCTTGGCCGTTCACGACGATAACAAGACTGCGATCGGCGTGCTGGGTGCTCTGCCGCCGCTGCTCCACTTGCTCCAATCCGAGAACGAGCGGACGCGGAATGACTCGGCGCTCGCACTGTACCACCTCTCCCTCGTACAGAGCAACCGGACCAAGATGATAAAACTCGGGTCGGTTCCGACCCTGACGAGCATGTTAAAGTCGGGTAAAATGAGGGGTCACGTGCTACTCATACTATGCAACTTGGCGTCTTGTGGCGATGGCCGGGCGGCGATGTTGGATGCGCAGGCGGTGGAGTGCTTGGTGGGGCTGCTAAGCGGCAGCGAATTGGGTTCCGGGTCGACCCGGGAGAGCTGCGTGGCGGTGTTATATGCGCTGAGTCACGGCGGGTTGAGGTTTAAAGCGGTGGCGAGGGCGGCGGGGGTGGTGGAGGTGTTGAAGAAGGAGGAGAAGGTGGGAAGCGAGAGGGCGAGGGAGAAGGTGAAGAGGATATTGGAGATGATGAGGGTGAAGGAGGAAGCCGAAGAAGACGACGTCGACTGGGAGGCGCTTCTTGACTCGGGGCTGTGTAGCCTGAGTCAGTTGCCCGAGTTATGA 1635 0.5346 MEFQDAVSFVVQGSLQKNRVSHKATESDAVTSGRKWKIFYRPSSTFASKKKQPPEEFLCPILGSLMADPVIVSSGHTFERVSVQACKTINFTPRLSDGSTPDFSTVIPNLALKSAIAKWCHNSANLLPEPPDVASSEKFVLSLMTRNQKTDSSIQNKTESQKVVITEEELIQGMKENPPVNFNHAATEVNRRPAHPYWNSEESAGSSPASPPMQLSTRPSCYSSASSSEIEVIVHCSPEEENILAKLRSSQVSEIDEAAISLRKLTKTREDTRAQICSPRLLSVLRSLVVSKYANIQVNAVAALVNLSLEKVNKVKILRSGIVPPLVDALKGGCPEVQEHASGAIFSLAVHDDNKTAIGVLGALPPLLHLLQSENERTRNDSALALYHLSLVQSNRTKMIKLGSVPTLTSMLKSGKMRGHVLLILCNLASCGDGRAAMLDAQAVECLVGLLSGSELGSGSTRESCVAVLYALSHGGLRFKAVARAAGVVEVLKKEEKVGSERAREKVKRILEMMRVKEEAEEDDVDWEALLDSGLCSLSQLPEL 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03185 544 PANTHER U BOX DOMAIN-CONTAINING 33 515 - -
Accr2g03185 544 MobiDBLite consensus disorder prediction 200 220 - -
Accr2g03185 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 127 IPR013083 -
Accr2g03185 544 SMART arm_5 351 391 IPR000225 GO:0005515
Accr2g03185 544 SMART arm_5 431 474 IPR000225 GO:0005515
Accr2g03185 544 SMART arm_5 269 309 IPR000225 GO:0005515
Accr2g03185 544 SMART arm_5 392 430 IPR000225 GO:0005515
Accr2g03185 544 SMART arm_5 310 350 IPR000225 GO:0005515
Accr2g03185 544 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842|GO:0016567
Accr2g03185 544 Coils Coil 255 275 - -
Accr2g03185 544 FunFam RING-type E3 ubiquitin transferase 238 514 - -
Accr2g03185 544 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 358 IPR000225 GO:0005515
Accr2g03185 544 Gene3D - 239 516 IPR011989 -
Accr2g03185 544 SMART Ubox_2 56 119 IPR003613 GO:0004842|GO:0016567
Accr2g03185 544 Pfam U-box domain 54 122 IPR003613 GO:0004842|GO:0016567
Accr2g03185 544 Pfam Kinesin-associated protein (KAP) 292 438 - -
Accr2g03185 544 SUPERFAMILY RING/U-box 45 128 - -
Accr2g03185 544 MobiDBLite consensus disorder prediction 196 220 - -
Accr2g03185 544 SUPERFAMILY ARM repeat 242 510 IPR016024 -
Accr2g03185 544 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03185 Accr-Chr2 67635147 67636781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03185 50 540 U-box Gene Family AT5G40140 55.332 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03185 - - qsa:O6P43_004571 649.432