Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03144 ATGGACAGCAGAATCAAGTACCCAGAAACTCACAGGAACAAGTGTGCAGCGTGCTTCAGGCAGTTCAACAAGTTGGAGCACTTAGTGGAACACATGAGGATCTCATATCATTCGGTTCACGAACCCACCTGTGGCATTTGTGGCAAACACTGTAGATCATTTGAGTCTCTAAGGGAACACCTTATAGGTCCATTACCAAAGCATGAGTGCAGAGATATTTTTGCGAACCGAGGATGCAAGTTTTGCTTGAAGGTCCTTGAGAGCCCTTACTCCCAAAGGATCCACCAAGAAAGATGCCAACTTTCTGCAAATACTGGACTAATTGGACGTTTTGCAAACCTGGGGATTCGTGATAATTTGACTATTGGAAAAGGGCCGCAAGTAGTTGCGCTTGCTTGCAAAATGGCGGGAGGTGGAAGTGACGGCTCACTTGATCTATGTGCGAGAGTCTGCATAATTGATGAGCGCGAAAACATCTTATTCCATTCTTACGTGAAGCCTCCAATTCCTGTCACCAACTACAGGTACGAGACAACAGGGATTCGACCGGAATACTTGAGGGACGCAATGACGATGAGGCAAGTGCAGAGGAGGATTCAAGACTTCCTCTGCAACGGAGAACCCGTGTGGAAGATTCGACCCAAGAGTGGGCGAGCCAGGATTCTTGTAGGTCATGGGCTAGATCACGACCTCGAGTCTCTCCAGGTGGAATATCGGTCAGAAATGATCAGGGACACTGAGAAATACCCTCCACTGATGAAGACGAGCAAGCTGAGCAACTCACTCAAGTATGAGATCCAGACGGGGATGCAGGACCCCTATGAGGATTGTGTGGCAACGATGAGGCTGTACATGAGGCTGAGGTCCCAAGCACACAAAATAGAGGAATACCCTTTGGCTTCAGATCCTCAAAATAAGAACAACTTCGCGTCATGGAGGCAAAGAGAGTTAGAGGGAATGAGCCCAGATCAAATGCTTGCAATCTCCAGGTCTGACTATTACTGCTGGTGCCTCGATTCCATCTAG 1026 0.4805 MDSRIKYPETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICGKHCRSFESLREHLIGPLPKHECRDIFANRGCKFCLKVLESPYSQRIHQERCQLSANTGLIGRFANLGIRDNLTIGKGPQVVALACKMAGGGSDGSLDLCARVCIIDERENILFHSYVKPPIPVTNYRYETTGIRPEYLRDAMTMRQVQRRIQDFLCNGEPVWKIRPKSGRARILVGHGLDHDLESLQVEYRSEMIRDTEKYPPLMKTSKLSNSLKYEIQTGMQDPYEDCVATMRLYMRLRSQAHKIEEYPLASDPQNKNNFASWRQRELEGMSPDQMLAISRSDYYCWCLDSI 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03144 341 Gene3D Classic Zinc Finger 14 63 - -
Accr2g03144 341 FunFam RNA exonuclease 4 124 303 - -
Accr2g03144 341 Gene3D - 125 304 IPR036397 GO:0003676
Accr2g03144 341 SMART exoiiiendus 127 293 IPR013520 -
Accr2g03144 341 Pfam Exonuclease 146 258 IPR013520 -
Accr2g03144 341 SUPERFAMILY Ribonuclease H-like 141 289 IPR012337 -
Accr2g03144 341 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Accr2g03144 341 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 339 IPR047021 GO:0004527
Accr2g03144 341 CDD REX4_like 129 284 IPR037431 GO:0006364|GO:0008408
Accr2g03144 341 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Accr2g03144 341 SMART c2h2final6 13 37 IPR013087 -
Accr2g03144 341 SMART c2h2final6 42 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03144 Accr-Chr2 67268110 67269807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03144 3 341 C2H2 Transcription Factor Family AT3G27970 71.307 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03144 - - gmx:100813973 612.068