Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03109 ATGGCTGCTACTGCAACGGCCTCTTCAGTGGGTCCAAGATATGCACCGCATGACCCAACACTTCCTAAACCATGGCGGGGACTTGTTGATGGTAAGACCGGTTATCTCTACTTTTGGAATCCTGAGACTAATGTCACCCAATACGAGAGGCCTACAAACTCAGCTCCCCAGCCAAAGTCTTCTTCAGTGCCCAGTTCTTCAGTCCAGGTCCAACAGTCATCACAAGGAACTCGGAGGGACCACAGTCCTGATTTACATGATAGCTACGGTAGAGACAACGTTGGTGGATCAAATTCTGAAGCTGGATCTAGGAATCATCAGAATCCAAAAGGTGGGAGTCTTAGTTCTCATAACATTCCAAACGGAATGCACATGACCGGAAATGTTAGCTCTTCTATCAAAAGCCATGGATTGTCAGATGCAGAAGTTGGATTAACTCCAGAGTCTTATCGACGTCGCCATGAAATAACTGTGTCTGGGGATAATGTTCCTCCGCCTTTCACATCCTTTGGCTCTTCTGGTTTTCCATCAGAGATTCTCAGAGAGGTACACAATGCTGGGTTCTCTGCCCCAACACCCATTCAGGCACAATCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCTATTGCGAAAACAGGCTCTGGGAAAACCCTGGGATATTTAATTCCAGGATTCATCCATCTTAAACGTGTTGGCAAAGACTCCAGATTGGGCCCCACTGTACTGGTACTGTCACCTACAAGGGAGCTGGCAACACAGATACAAGATGAAGCTGTGAAGTTTGCAAAGTCATCCAGAATTTCTTGTGTATGTTTGTATGGGGGAGCACCAAAGGGTCCTCAATTGAGAGACATTGACCGAGGAGCAGATATTGTGGTTGCCACTCCTGGCCGCTTGAATGATATTCTTGAGATGAGGAGAATTAGTCTTCATCAGGTTTCGTACCTTGTACTAGATGAGGCTGACCGCATGCTAGATATGGGTTTTGAACCTCAAATCAGGAAGATTGTGAAGGAAGTGCCTGCACGGCGGCAAACCCTTATGTTTACTGCAACATGGCCTAAGGAGGTTAGGAAAATTGCAGCTGATCTGCTGGTCAATCCTGTTCAGGTTAACATTGGCAATGTCGATGAGCTTGTTGCTAACAAGTCCATTACGCAGCATATAGAAGTACTGGCACCAATGGAGAAACACAGACGATTGGAACAAATATTGCGGTCACAGGATCCAGGATCAAAAATAATTGTTTTTTGTTCTACCAAGAAGATGTGTGATCAGCTTGCACGTAATCTTACACGCCAGTTTGGGGCTGCTGCCATTCATGGGGATAAATCCCAGTCTGAGAGGGACCATGTGTTGAACCAATTTCGAACTGGGAGATCTCCTGTGCTTGTAGCAACTGATGTTGCAGCTCGAGGATTAGACATCAAAGATATTAGGGTCGTTGTCAATTATGACTTCCCTACTGGTGTGGAGGATTATGTCCATAGGATTGGAAGGACAGGAAGGGCAGGAGCCACTGGCTTGGCATACACTTTTTTTGGAGACCACGATGCTAAACATGCTTCAGATCTCATCAAAATCTTGGAAGGTGCAAGTCAGCGAGTCCCACCAGAACTCCGTGATTTGGTATCACGTGGTGGTGGGATGAACAGATCCAGGCGATGGGGTTCTGGTGGTTCTGGTGGTCGTGGGGGACGCAGTGATTCCGGATCTGGATATGGGGGACGGGGTGGTGATTCTGGATATGGGGGAAGGGGTGGATGGGGAGCCACTCCTGGTGGCAGAGGTGGGGGCCGTGGATTTGACTATGATTACCAGAGGAGCCCTGATGGGGGTAGAAACTTCAACCGTGATCGTAGCCGCAGTCGAAGTCCCAACAGGCATGAAAAGGCAGCACCACCTTCACAAGGTTTTAGTTTTCACCAGGCAATGACGGAACGTAAAGGGGGCAGTGATCATGACAAGAGCTTTGATCACAGTAGAAACCGCAGTCGCAGCCCTGTTAAGCATGATAGGGCACCATCTGGCCGTGAACGTTCCCCAGTCTATAGTTTTCACGAGATGATGATAAAACGTGGTACATCAAGGCACCCATTTAGTACTCACCGGACCAGTTCACCATCGTCCCCCTGTGGTGGTGTGTCAGATGGAAATCCTCGATCTCCTAGAAATAAGTTGGATGATGGGAGATATGGTGGGGCTAATTCTTCTTACCTTGGAGAAGAGGAGGAAGGGATGATTCGTCATGATGACGATGCTCCATATGGGGTTGCGGAATAG 2289 0.4792 MAATATASSVGPRYAPHDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTNSAPQPKSSSVPSSSVQVQQSSQGTRRDHSPDLHDSYGRDNVGGSNSEAGSRNHQNPKGGSLSSHNIPNGMHMTGNVSSSIKSHGLSDAEVGLTPESYRRRHEITVSGDNVPPPFTSFGSSGFPSEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIHLKRVGKDSRLGPTVLVLSPTRELATQIQDEAVKFAKSSRISCVCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAPMEKHRRLEQILRSQDPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDHVLNQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDHDAKHASDLIKILEGASQRVPPELRDLVSRGGGMNRSRRWGSGGSGGRGGRSDSGSGYGGRGGDSGYGGRGGWGATPGGRGGGRGFDYDYQRSPDGGRNFNRDRSRSRSPNRHEKAAPPSQGFSFHQAMTERKGGSDHDKSFDHSRNRSRSPVKHDRAPSGRERSPVYSFHEMMIKRGTSRHPFSTHRTSSPSSPCGGVSDGNPRSPRNKLDDGRYGGANSSYLGEEEEGMIRHDDDAPYGVAE 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03109 762 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 168 196 IPR014014 GO:0003724
Accr2g03109 762 SMART helicmild6 427 507 IPR001650 -
Accr2g03109 762 SMART ww_5 20 53 IPR001202 GO:0005515
Accr2g03109 762 MobiDBLite consensus disorder prediction 541 762 - -
Accr2g03109 762 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Accr2g03109 762 CDD SF2_C_DEAD 387 516 - -
Accr2g03109 762 SUPERFAMILY WW domain 13 53 IPR036020 GO:0005515
Accr2g03109 762 MobiDBLite consensus disorder prediction 702 718 - -
Accr2g03109 762 CDD WW 22 52 IPR001202 GO:0005515
Accr2g03109 762 MobiDBLite consensus disorder prediction 47 78 - -
Accr2g03109 762 Gene3D - 378 548 IPR027417 -
Accr2g03109 762 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 319 327 IPR000629 -
Accr2g03109 762 SMART ultradead3 187 390 IPR014001 -
Accr2g03109 762 MobiDBLite consensus disorder prediction 1 28 - -
Accr2g03109 762 MobiDBLite consensus disorder prediction 92 137 - -
Accr2g03109 762 Pfam DEAD/DEAH box helicase 192 362 IPR011545 GO:0003676|GO:0005524
Accr2g03109 762 Pfam Helicase conserved C-terminal domain 399 507 IPR001650 -
Accr2g03109 762 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 119 546 - -
Accr2g03109 762 Gene3D - 16 67 - -
Accr2g03109 762 FunFam probable ATP-dependent RNA helicase DDX17 136 376 - -
Accr2g03109 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 373 IPR014001 -
Accr2g03109 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 546 IPR001650 -
Accr2g03109 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 523 IPR027417 -
Accr2g03109 762 MobiDBLite consensus disorder prediction 745 762 - -
Accr2g03109 762 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Accr2g03109 762 MobiDBLite consensus disorder prediction 649 680 - -
Accr2g03109 762 FunFam ATP-dependent RNA helicase RhlB 377 549 - -
Accr2g03109 762 MobiDBLite consensus disorder prediction 47 139 - -
Accr2g03109 762 Gene3D - 145 377 IPR027417 -
Accr2g03109 762 MobiDBLite consensus disorder prediction 614 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03109 Accr-Chr2 66727304 66731431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03109 166 546 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 2.69e-65 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03109 K12823 - gmx:100786511 994.571