Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03097 ATGTTCACATTCACTAGCTTACCCCAAAACAATTTACTTACTATGGCTTTTTCTAAAGATGAATGTGTTATACTCATCTTCTTAGTTGCGGGATGTATCAGTTTATTATTTCTTGGCTATATCTTTTGGCTATTTAACTATTATCGTGCTCTACACGATGCGCTTTTGAACCTCCTTCCCAGCTTCACCTACACCTCTTCCTCCTCCACCGCAGATGTGTGTGCGATATGCTTGACTGAGTTCAAAGAAGGAGATACAGGACGACTACTCCCAAACTGCAACCACATCTTTCATCACGGTTGCATCTATGAGTGGATCAAAAGAAGCAATACTGCTTGCCCATTGTGCCGAGAGGTTATCAATCCGAGAACCACATCACTGCATGAAAATATAGAAGCATCTCTTGGAGGAGAAGGTCAATTAGAGAATTCGCCGAATATAAATCTTCCTTCGACAATTTGGTGCCCCAGAAACACTCAACATGTTATTGTATTAAAGCAAGTGGCAATAGAGATTCCTGAGGAAGATAAGAGATAG 537 0.4078 MFTFTSLPQNNLLTMAFSKDECVILIFLVAGCISLLFLGYIFWLFNYYRALHDALLNLLPSFTYTSSSSTADVCAICLTEFKEGDTGRLLPNCNHIFHHGCIYEWIKRSNTACPLCREVINPRTTSLHENIEASLGGEGQLENSPNINLPSTIWCPRNTQHVIVLKQVAIEIPEEDKR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03097 178 Pfam Ring finger domain 73 117 IPR001841 -
Accr2g03097 178 ProSiteProfiles Zinc finger RING-type profile. 74 117 IPR001841 -
Accr2g03097 178 SMART FANCL_C_2 70 125 - -
Accr2g03097 178 SMART ring_2 74 116 IPR001841 -
Accr2g03097 178 SMART ringv_2 73 117 IPR011016 GO:0008270
Accr2g03097 178 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 52 134 - -
Accr2g03097 178 SUPERFAMILY RING/U-box 73 123 - -
Accr2g03097 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 123 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03097 Accr-Chr2 66641657 66642193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03097 49 149 C3H Transcription Factor Family AT2G42360 37.500 3.10e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03097 - - pcin:129307892 129.413