Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr2g02892 | ATGAGTTTTCAAGATCTCCAGGGCGGGGCCAAGCGACCCGCTTCCCGAACTCAATCGCCATCGCAGGCGGTGGCTGCCGGAATTTTCCAGATTAATACAGGCGTCGCCACTTTCCGACGACTCGTTGATGCCATCGGAACCGTCAAAGACACCGTCGGTCACCGCCACAAGCTGCACGAAACGAGGCAGCGGATATTGCAGCTGGTGAAGGATACTTCTGCAAAGCTCAAAGCCTTGAGCGAATCTGATCTTGCTGCCGACGCCGATGCCGATTCTGGTAAGAAAATTGAAGATGCAAAGCTGGCGAGAGATTTTCAAACCACATTGCAAGAATTCCAGAGAGTGCAACAGCTTGCCTCTGAGCGCGAATCTACCTACCTTCCCGCTGCTCCAGCTTCTTCCTTACCTGCAAGCTCTGGCTCTGTTGGGGAATCAACTGACATAGGTCAGGAAAGCCAACCTTTAATCAGGGAACAAAAAAGGCAGGAGATACTCTTATTAGATAGTGATATTGCTTTCAATGAGGCCATGATTGAAGAACGAGAGCAGGGCATCAAGGAGGTAGAGGTGCAAATTGGACAAGTAAATGAAATTTTCAAGGATCTAGCCGTTCTGGTTCATGAACAGGGCGTGGTTATTGATGATATTCAATCAAATATTGAAGCTTCTGTGGGTTCAACAACCCAGGCTACTACACAGCTAGCCAAGGCTTCCAAAAATGTGAAATCTAAATCTTCATGGTGTTGGTGGGTGCTTATAATTCTTGTTATAGTGGTGGTCGTGGTTCTTATTTTTCTCATTATTTAG | 807 | 0.4721 | MSFQDLQGGAKRPASRTQSPSQAVAAGIFQINTGVATFRRLVDAIGTVKDTVGHRHKLHETRQRILQLVKDTSAKLKALSESDLAADADADSGKKIEDAKLARDFQTTLQEFQRVQQLASERESTYLPAAPASSLPASSGSVGESTDIGQESQPLIREQKRQEILLLDSDIAFNEAMIEEREQGIKEVEVQIGQVNEIFKDLAVLVHEQGVVIDDIQSNIEASVGSTTQATTQLAKASKNVKSKSSWCWWVLIILVIVVVVVLIFLII | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr2g02892 | 268 | FunFam | Syntaxin-22 like | 168 | 268 | - | - | |
| Accr2g02892 | 268 | MobiDBLite | consensus disorder prediction | 131 | 153 | - | - | |
| Accr2g02892 | 268 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Accr2g02892 | 268 | FunFam | Syntaxin-22 like | 15 | 130 | - | - | |
| Accr2g02892 | 268 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 175 | 237 | IPR000727 | - | |
| Accr2g02892 | 268 | Pfam | Syntaxin-like protein | 25 | 126 | IPR006011 | GO:0016020 | |
| Accr2g02892 | 268 | SMART | SynN_4 | 9 | 124 | IPR006011 | GO:0016020 | |
| Accr2g02892 | 268 | Pfam | SNARE domain | 212 | 263 | IPR000727 | - | |
| Accr2g02892 | 268 | PANTHER | SYNTAXIN | 22 | 257 | IPR045242 | - | |
| Accr2g02892 | 268 | Gene3D | - | 9 | 134 | - | - | |
| Accr2g02892 | 268 | CDD | SNARE_Qa | 178 | 236 | - | - | |
| Accr2g02892 | 268 | Gene3D | - | 172 | 268 | - | - | |
| Accr2g02892 | 268 | SMART | tSNARE_6 | 170 | 237 | IPR000727 | - | |
| Accr2g02892 | 268 | MobiDBLite | consensus disorder prediction | 127 | 153 | - | - | |
| Accr2g02892 | 268 | SUPERFAMILY | t-snare proteins | 18 | 230 | IPR010989 | GO:0016020|GO:0016192 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr2g02892 | Accr-Chr2 | 64823039 | 64825122 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr2g02892 | 1 | 255 | SNARE and Associated Proteins | AT5G46860 | 56.757 | 4.83e-91 | 268 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr2g02892 | - | - | gmx:100787141 | 337.035 |