LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g02656	ATGGGTAGTAGAACAGTAAATACTAGGACAGACAACAATAACAAATTTGCCAACGGCATGCCGAGTTACGCCCCTCCGCTGCCTACTTCTGCTTCCATGGGTACGGAAGGAAATTCTGTTCTTCCTTCCCGGATTTCTGAATTTGGAGGCATTGATCAATCTTTCGGATTTCGTGTGGAGGATGCTATCAATCTTAGCCGAAATCCAGTATTCAATCAAATGAAGTCAAATAACCAACCTCTGGGTGTGAATGTTCAGTTTGGCGCTTTAAATAAGACATTACCACTACAGAATGACTCAAATTCCAATCTGGCTTCTACATCTGGTGGCCAGCGTGAGAACTGGGGGGAGTCTAACATGGCAGATGGAAGCCCAAGGACTGATGACACTTCAACAGATGATACAGACGATAAAAATCAAAGGTCTGAGAGGGGTCAATTAGTTGTTGGGGTCTCTGATTCCAGTGAGAGATCAAAAGATAAATCAGATCAGAAGACATTACGACGTCTAGCTCAAAATCGTGAAGCTGCTAGGAAAAGTCGGCTACGAAAAAAGGCATATGTGCAGCAATTAGAAAGTAGCAGGCTGAAACTGACTCAACTTGAGCAGGAGCTCCAACGAGCCCGCCAGCAGGGCATATTTATTTCAAGTATGGGAGATCAGTCTCATTCAATGAGTGGAAATGGTGCAATGACCTTTGATGTGGAGTATGCACGTTGGTTAGAAGAACATAACCGGCAGATAAATGAGCTAAGGGCTGCAGTCAATTCTCATGCCGGAGATATTGAACTTCGGACAATTGTTGACAATGTTATGTCCCACTATGAAGAGATTTTCAGGCTCAAGGGTGCTGCAGCAAAAGCTGATGTCTTCCACATACTATCTGGAATGTGGAAAACACCAGCTGAGAGATGTTTCATGTGGATTGGAGGCTTTCGCTCATCTGAGCTTCTCAAGCTTCTTGGAAACCATTTGGAGCCATTGACAGAGCAACAGTTGATGAACATTTACAGCTTGCAACAGTCATCACAACAGGCCGAAGATGCGCTGTCCCAAGGAATGGATGCATTACAACAGTCATTAGCTGAGACTTTGGCTAATGAGTCATCCACCCCATCGGGGCCTTCAGGAAATGTGGCAAACTATATGGGGCAGATGGCTATGGCCATGGGGAAGCTGGGTACTCTTGAGGGGTTTCTTCGGCAGGCTGACAATCTGCGACAGCAAACATTACAACAAATGTTGCGGATATTAACCACAAGGCAGTCGGCTCGAGCTCTTCTTGCAATAAGTGATTATTTCTCCAGGCTACGAGCCTTGAGTTCGCTGTGGCTTGCCAGGCCAAGGGAGTGA	1353	0.4568	MGSRTVNTRTDNNNKFANGMPSYAPPLPTSASMGTEGNSVLPSRISEFGGIDQSFGFRVEDAINLSRNPVFNQMKSNNQPLGVNVQFGALNKTLPLQNDSNSNLASTSGGQRENWGESNMADGSPRTDDTSTDDTDDKNQRSERGQLVVGVSDSSERSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSMGDQSHSMSGNGAMTFDVEYARWLEEHNRQINELRAAVNSHAGDIELRTIVDNVMSHYEEIFRLKGAAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLGNHLEPLTEQQLMNIYSLQQSSQQAEDALSQGMDALQQSLAETLANESSTPSGPSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE	450

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g02656	450	FunFam	BZIP family transcription factor	164	213	-	-
	Accr2g02656	450	Pfam	Seed dormancy control	247	321	IPR025422	GO:0006351\|GO:0043565
	Accr2g02656	450	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	168	183	IPR004827	GO:0003700\|GO:0006355
	Accr2g02656	450	SMART	brlzneu	161	224	IPR004827	GO:0003700\|GO:0006355
	Accr2g02656	450	MobiDBLite	consensus disorder prediction	94	167	-	-
	Accr2g02656	450	MobiDBLite	consensus disorder prediction	1	19	-	-
	Accr2g02656	450	Pfam	Basic region leucine zipper	161	207	IPR004827	GO:0003700\|GO:0006355
	Accr2g02656	450	CDD	bZIP_HBP1b-like	165	217	-	-
	Accr2g02656	450	Gene3D	-	164	218	-	-
	Accr2g02656	450	Coils	Coil	184	211	-	-
	Accr2g02656	450	PANTHER	TRANSCRIPTION FACTOR TGA9	109	450	-	-
	Accr2g02656	450	MobiDBLite	consensus disorder prediction	94	126	-	-
	Accr2g02656	450	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	163	207	IPR004827	GO:0003700\|GO:0006355
	Accr2g02656	450	MobiDBLite	consensus disorder prediction	1	23	-	-
	Accr2g02656	450	SUPERFAMILY	Leucine zipper domain	165	208	IPR046347	GO:0003700\|GO:0006355
	Accr2g02656	450	ProSiteProfiles	DOG1 domain profile.	230	447	IPR025422	GO:0006351\|GO:0043565
	Accr2g02656	450	Coils	Coil	241	261	-	-
	Accr2g02656	450	MobiDBLite	consensus disorder prediction	127	143	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g02656	Accr-Chr2	62348288	62352144	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g02656	120	450	bZIP Transcription Factor Family	AT3G12250	76.435	0.0	509

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Accr2g02656		DOG1	1.3e-32	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g02656	K14431		-	qsu:112036206	687.952