Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02545 ATGGACGATTTCAAAAAGAGAAAGCTAGAAGAGGCCGGCAACGGCGATGCTTCTTCGAAGGAAGAGCTTCGCTTTCTCCTGGACCCGCTGGCCAAACCCCAACTTGTTGATCTCCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCTCTTCAGAAACCTTGTGTGCTGCATTTCAAGAACATGGAGAAATCGAGGAAGGAGCTGTTATCTATGATAAAGCAACAGGAAAATCCCGTGGTTATGGCTTCATCACTTTCAAACATATGGAATCAACTCATTGTGCATTAAGAGCACCGAGCAAGTTAATTGATGGCAGGTTGGCTGTCTGTAATTTAGCTTGTGAGGGCCTAAGCGGAGCAAGTAATGCCCCTGATCTTTCCCTGAGGAAGCTGTACATTGGAAGCTTATCACCAGAAGTCAGTAGTGAAATGTTGCTTAACTTTTTTGGGAGGTATGGTGAAATAGAGGAAGGGTCAGTTGCATATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTCGTTACATACAAGACTGCAGAAGCTGCAAAGAAGGCAATAGATGATCCAGAAAAGACTCTTGGGGGGAGAAATATAATTGTAAAATATGCGGATTTCCACAAGGGGAAAACAGGGCAGCCATCAGTGGTTCCAATGACAGCCTTACCAATGGCTCCTGGATATGTGCAGATGCAGCCTGTCAAAACACATGTTACCAACCCTCAAGTTGGCTACAATTACCCTCAGACCGTAGCATCATACCCTGCACCTTCTTATCCGAGTCCTCCCACGGCAGTCGTACCTTATCCTTCAGTTTCTGGGAAGTCAACTGCGCCTGTTGGAATGAACAACTACCCATATTACTATCCTAAGCAATAA 957 0.4483 MDDFKKRKLEEAGNGDASSKEELRFLLDPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITFKHMESTHCALRAPSKLIDGRLAVCNLACEGLSGASNAPDLSLRKLYIGSLSPEVSSEMLLNFFGRYGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADFHKGKTGQPSVVPMTALPMAPGYVQMQPVKTHVTNPQVGYNYPQTVASYPAPSYPSPPTAVVPYPSVSGKSTAPVGMNNYPYYYPKQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02545 318 Gene3D - 147 243 IPR012677 -
Accr2g02545 318 Gene3D - 44 146 IPR012677 -
Accr2g02545 318 SUPERFAMILY RNA-binding domain, RBD 53 141 IPR035979 GO:0003676
Accr2g02545 318 FunFam UBP1-associated protein 2C-like 60 141 - -
Accr2g02545 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 132 IPR000504 GO:0003723
Accr2g02545 318 CDD RRM2_NsCP33_like 156 230 - -
Accr2g02545 318 PANTHER GEO13361P1-RELATED 47 143 - -
Accr2g02545 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Accr2g02545 318 SMART rrm1_1 156 228 IPR000504 GO:0003723
Accr2g02545 318 SMART rrm1_1 65 137 IPR000504 GO:0003723
Accr2g02545 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Accr2g02545 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
Accr2g02545 318 SUPERFAMILY RNA-binding domain, RBD 148 238 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02545 Accr-Chr2 60967553 60972005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02545 151 239 C2H2 Transcription Factor Family AT2G19380 37.079 1.34e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02545 K12741 - gmx:100776344 489.189