Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02540 ATGGATGTTCGTAAGAGAGGTAGGCCTGACGCTGGCATCAAAGTTAACGGTGGCCTCAAGAAAACCAAGCAAGAATTGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCCTTTGGCGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGCTATAATGCTGTTGCTCAGATGATGAATTTAGCCCCCGCTACCCCTGCTGCTTCTAGAAATGTTACAGCCCCACCACCGGTGCATAATCATAATCACAATCACAATCACAATCACAATGGCTCGGCTCCTGCTGTCAAATCTCGCATATGCAATAAATATAATTCTGCAGAAGGCTGCAAATTTGGTGATAAGTGTCATTTTGCACATGGTGAATGGGAACTTGGCAAGCCTATTGCTGCTTCAGCAGAAGATCATCGTGCTGTGGGACCTATTGCAGGCCGTATTGCTCCCAACCGAATGGAGCCCCCACCTGGTCCTGTGGCTAGTTTTGGTGCCAGTGCCAATGCCAAGATTAGTGTAGAAGCCTCCTTAGCTGGAGCAATCATTGGGAAGGGTGGCGTAAATTCCAAGCAGATATGTCGCCAAACTGGAGCCAAACTATCAATTCGGGATCATGAGTCAGATCCAAATCTCAGAAACATTGAGCTTGAGGGAAGCTTTGAACAAATCCAGGAAGCTAGTTACATGGTGAAAGAGTTACTCGCAACCATCTCAATGTCCGCACCACCTAAAATCCCTGGTGTTCCTGGTGGCCCAGCCCCGCGTGGAAGCAATTATAAGACCAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGCACCTTCGGAGAAAGATGTCACTTTGCACATGGGGCTGCTGAACTGCGTAAAACAGTAGTATGA 912 0.4781 MDVRKRGRPDAGIKVNGGLKKTKQELESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPATPAASRNVTAPPPVHNHNHNHNHNHNGSAPAVKSRICNKYNSAEGCKFGDKCHFAHGEWELGKPIAASAEDHRAVGPIAGRIAPNRMEPPPGPVASFGASANAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIQEASYMVKELLATISMSAPPKIPGVPGGPAPRGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKTVV 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02540 303 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
Accr2g02540 303 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 167 247 IPR036612 GO:0003723
Accr2g02540 303 CDD KH-I_AtC3H36_like 180 245 - -
Accr2g02540 303 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Accr2g02540 303 Pfam KH domain 181 243 IPR004088 GO:0003723
Accr2g02540 303 SUPERFAMILY CCCH zinc finger 108 139 IPR036855 GO:0046872
Accr2g02540 303 FunFam Zinc finger CCCH domain-containing protein 103 140 - -
Accr2g02540 303 SMART kh_6 176 246 IPR004087 GO:0003676
Accr2g02540 303 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 171 IPR045877 GO:0003729
Accr2g02540 303 ProSiteProfiles Type-1 KH domain profile. 177 241 - -
Accr2g02540 303 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Accr2g02540 303 ProSiteProfiles Zinc finger C3H1-type profile. 108 136 IPR000571 GO:0046872
Accr2g02540 303 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Accr2g02540 303 SMART c3hfinal6 110 135 IPR000571 GO:0046872
Accr2g02540 303 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Accr2g02540 303 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Accr2g02540 303 FunFam Zinc finger CCCH domain-containing protein 264 300 - -
Accr2g02540 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 294 IPR000571 GO:0046872
Accr2g02540 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 110 135 IPR000571 GO:0046872
Accr2g02540 303 Gene3D K Homology domain, type 1 174 268 IPR036612 GO:0003723
Accr2g02540 303 SUPERFAMILY CCCH zinc finger 268 300 IPR036855 GO:0046872
Accr2g02540 303 Gene3D - 269 301 - -
Accr2g02540 303 Gene3D - 101 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02540 Accr-Chr2 60884881 60889846 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr2g02540 KH_1 2.6e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02540 - - gmx:100803981 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02540 2 60884881 60889846 Accr5g02008 5 46459198 46472336 CCT