Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02520 ATGGCTCCTGGAGTCAATGCTTGCAAAGAGTTTCAACCGCACTTGACAATGTCAGATTATGACATGTCCAAGTCCAAACACAATGCTAAAAGTAGTAGCCCTCTTACAAAGTCTAATTCTGACTTTGGTGGAAAACATGGTAGTAATTCGAAGAATGGTGTTCATGACTTACTTGAGTGCCCTAGTTGCAAGAATTTGATGTATCCCCCAATTTACCAGTGCCCAAATGGCCACACTTTATGTTCAAACTGTAAGACTAGAGTGCATAGCCGCTGCCCAACTTGTCACTTTGACCTAGGAAACATAAGATGTTTAGCCCTGGAAAAGGTGGCTGAGTCATTGGAACTTCCTTGCAGATATCAGAGTTTAGGTTGTCATGATATATTTGCATGCTATACCAAGCTTAAGCATGAGCCAAATTGTAGATTTCGTCCATATAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGCAACATTCCAACTCTTGTCAGCCATCTCAAGGATGATCACAAAGTTGACATGCATGATGGATGTACTTTCAACCATCGATATGTGAAATCAAACCCTCATGAAGTTGAAAATGCAACATGGATGCTAACTGTTTTCAATTGCTTTGGAAGACATTTCTGCTTGCACTTTGAGGCTTTTCAGATTGGTACAGCTCCAGTTTATATGGCTTTTTTACGATTCATGGGTGATGATGACGAGGCAAAGAGATTCAGCTACAGCTTGGAAGTTGGTGCTAATGGCCGCAGGCTGATATGGCAAGGGATTCCAAGGAGCATTCGGGACAGTCACAAGAATGTTCGTGACAATCAAGACGGACTTGTTATTCAGAGGAAGCTAGCTCTGTGTTTTTCTGGTGGGGGTGGACAGGAGTTAAAGTTGAGGATTACTGGGCGTATATGGAAAGAAGAATGA 927 0.425 MAPGVNACKEFQPHLTMSDYDMSKSKHNAKSSSPLTKSNSDFGGKHGSNSKNGVHDLLECPSCKNLMYPPIYQCPNGHTLCSNCKTRVHSRCPTCHFDLGNIRCLALEKVAESLELPCRYQSLGCHDIFACYTKLKHEPNCRFRPYNCPYAGSECSVMGNIPTLVSHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQIGTAPVYMAFLRFMGDDDEAKRFSYSLEVGANGRRLIWQGIPRSIRDSHKNVRDNQDGLVIQRKLALCFSGGGGQELKLRITGRIWKEE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02520 308 SUPERFAMILY TRAF domain-like 113 304 - -
Accr2g02520 308 ProSiteProfiles Zinc finger SIAH-type profile. 113 173 IPR013010 GO:0008270
Accr2g02520 308 MobiDBLite consensus disorder prediction 22 46 - -
Accr2g02520 308 FunFam E3 ubiquitin-protein ligase SINAT3 110 168 - -
Accr2g02520 308 ProSiteProfiles Zinc finger RING-type profile. 60 96 IPR001841 -
Accr2g02520 308 Pfam Seven in absentia protein family 102 301 IPR018121 GO:0005737|GO:0006511|GO:0007275
Accr2g02520 308 SUPERFAMILY RING/U-box 54 100 - -
Accr2g02520 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 148 IPR013083 -
Accr2g02520 308 FunFam E3 ubiquitin-protein ligase SINAT5-like 169 301 - -
Accr2g02520 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 307 - -
Accr2g02520 308 CDD RING-HC_SIAHs 58 96 - -
Accr2g02520 308 MobiDBLite consensus disorder prediction 27 46 - -
Accr2g02520 308 Gene3D Classic Zinc Finger 149 170 - -
Accr2g02520 308 CDD Sina 174 302 - -
Accr2g02520 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 301 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02520 Accr-Chr2 60675344 60677411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02520 1 308 C3H Transcription Factor Family AT2G41980 74.110 5.76e-171 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02520 K04506 - qsa:O6P43_005820 541.576