Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Accr2g02520 | ATGGCTCCTGGAGTCAATGCTTGCAAAGAGTTTCAACCGCACTTGACAATGTCAGATTATGACATGTCCAAGTCCAAACACAATGCTAAAAGTAGTAGCCCTCTTACAAAGTCTAATTCTGACTTTGGTGGAAAACATGGTAGTAATTCGAAGAATGGTGTTCATGACTTACTTGAGTGCCCTAGTTGCAAGAATTTGATGTATCCCCCAATTTACCAGTGCCCAAATGGCCACACTTTATGTTCAAACTGTAAGACTAGAGTGCATAGCCGCTGCCCAACTTGTCACTTTGACCTAGGAAACATAAGATGTTTAGCCCTGGAAAAGGTGGCTGAGTCATTGGAACTTCCTTGCAGATATCAGAGTTTAGGTTGTCATGATATATTTGCATGCTATACCAAGCTTAAGCATGAGCCAAATTGTAGATTTCGTCCATATAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGCAACATTCCAACTCTTGTCAGCCATCTCAAGGATGATCACAAAGTTGACATGCATGATGGATGTACTTTCAACCATCGATATGTGAAATCAAACCCTCATGAAGTTGAAAATGCAACATGGATGCTAACTGTTTTCAATTGCTTTGGAAGACATTTCTGCTTGCACTTTGAGGCTTTTCAGATTGGTACAGCTCCAGTTTATATGGCTTTTTTACGATTCATGGGTGATGATGACGAGGCAAAGAGATTCAGCTACAGCTTGGAAGTTGGTGCTAATGGCCGCAGGCTGATATGGCAAGGGATTCCAAGGAGCATTCGGGACAGTCACAAGAATGTTCGTGACAATCAAGACGGACTTGTTATTCAGAGGAAGCTAGCTCTGTGTTTTTCTGGTGGGGGTGGACAGGAGTTAAAGTTGAGGATTACTGGGCGTATATGGAAAGAAGAATGA | 927 | 0.425 | MAPGVNACKEFQPHLTMSDYDMSKSKHNAKSSSPLTKSNSDFGGKHGSNSKNGVHDLLECPSCKNLMYPPIYQCPNGHTLCSNCKTRVHSRCPTCHFDLGNIRCLALEKVAESLELPCRYQSLGCHDIFACYTKLKHEPNCRFRPYNCPYAGSECSVMGNIPTLVSHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRHFCLHFEAFQIGTAPVYMAFLRFMGDDDEAKRFSYSLEVGANGRRLIWQGIPRSIRDSHKNVRDNQDGLVIQRKLALCFSGGGGQELKLRITGRIWKEE | 308 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Accr2g02520 | 308 | SUPERFAMILY | TRAF domain-like | 113 | 304 | - | - | |
Accr2g02520 | 308 | ProSiteProfiles | Zinc finger SIAH-type profile. | 113 | 173 | IPR013010 | GO:0008270 | |
Accr2g02520 | 308 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
Accr2g02520 | 308 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 110 | 168 | - | - | |
Accr2g02520 | 308 | ProSiteProfiles | Zinc finger RING-type profile. | 60 | 96 | IPR001841 | - | |
Accr2g02520 | 308 | Pfam | Seven in absentia protein family | 102 | 301 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Accr2g02520 | 308 | SUPERFAMILY | RING/U-box | 54 | 100 | - | - | |
Accr2g02520 | 308 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 148 | IPR013083 | - | |
Accr2g02520 | 308 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 169 | 301 | - | - | |
Accr2g02520 | 308 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 37 | 307 | - | - | |
Accr2g02520 | 308 | CDD | RING-HC_SIAHs | 58 | 96 | - | - | |
Accr2g02520 | 308 | MobiDBLite | consensus disorder prediction | 27 | 46 | - | - | |
Accr2g02520 | 308 | Gene3D | Classic Zinc Finger | 149 | 170 | - | - | |
Accr2g02520 | 308 | CDD | Sina | 174 | 302 | - | - | |
Accr2g02520 | 308 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 171 | 301 | IPR008974 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Accr2g02520 | Accr-Chr2 | 60675344 | 60677411 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Accr2g02520 | 1 | 308 | C3H Transcription Factor Family | AT2G41980 | 74.110 | 5.76e-171 | 474 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Accr2g02520 | K04506 | - | qsa:O6P43_005820 | 541.576 |