Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02459 ATGGCCGCCTCAACCGCTCCTTCCTCTTCCCTCTGCAATCGACTCCACAGCCTCTACGTCACTCCTTCTTCCTTCTCAATTACCCTCAAATTCCCTCCCACGCCCATTTCTCATAAACCTCCCAATCTCAATCTCAAACCTCACTCCCTTACTCCCTCACCTCTCTCACTCTACCATCTTCGTTTGGCTTCTGCTGCTTTCGATGGATTCGAAGTCGATCAAGACAGCACTAACGCTGAGCAGGTCCAAGAACCGGAAGCCGAATCCTCTGAAAATTCAGAACAAGAGGAGGATGACCAGAAGGTATCTGACTCAAACGAAGCTGGGAGGATCTATGTGGGAAATTTGCCCTTCTCAATGACTTCTTCTCAGTTATCCGAGATTTTTCAAGAGGCTGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGCGTTGATGATGCTAAGGAAGCCATTCGGATGTTTGATGGCTCTCAAGTTGGAGGCAGGACGGTGAAGGTAAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGCTAGTGATGGGGCCAAAAGTAAGGAACAACTACAGAGGCTTCGTGGACAGTCCTCACAAGATATACGCTGGAAACCTTGGATGGGGATTGACTTCACAGGGTCTGAGAGATGCTTTTGCTGGTCAGCCTGGTTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACTGGAAGATCTCGAGGCTTCGGGTTTGTCTCCTTCGAAACTGCTGAGGCTGTTGAGGCCGCTTTGACTGCTATGAATGGTGTGGAGGTTCAAGGCAGGGCTCTGAGACTGAATTTGGCTACAGATAGGACAAGCGGATCTCCTCCAACAACAGATGAAATTGCACAAGCTAGTGTGGATAGCTCGGAGTTGGTGTCTAGTGTGAGCACATGA 957 0.489 MAASTAPSSSLCNRLHSLYVTPSSFSITLKFPPTPISHKPPNLNLKPHSLTPSPLSLYHLRLASAAFDGFEVDQDSTNAEQVQEPEAESSENSEQEEDDQKVSDSNEAGRIYVGNLPFSMTSSQLSEIFQEAGNVVSVEIVYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRTVKVNFPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEAVEAALTAMNGVEVQGRALRLNLATDRTSGSPPTTDEIAQASVDSSELVSSVST 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02459 318 Gene3D - 197 298 IPR012677 -
Accr2g02459 318 CDD RRM1_PSRP2_like 110 189 - -
Accr2g02459 318 CDD RRM2_NsCP33_like 213 288 - -
Accr2g02459 318 Gene3D - 65 192 IPR012677 -
Accr2g02459 318 MobiDBLite consensus disorder prediction 73 106 - -
Accr2g02459 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Accr2g02459 318 MobiDBLite consensus disorder prediction 289 318 - -
Accr2g02459 318 PANTHER OS02G0815200 PROTEIN 41 291 - -
Accr2g02459 318 FunFam 33 kDa ribonucleoprotein, chloroplastic 194 298 - -
Accr2g02459 318 SMART rrm1_1 213 286 IPR000504 GO:0003723
Accr2g02459 318 SMART rrm1_1 110 183 IPR000504 GO:0003723
Accr2g02459 318 MobiDBLite consensus disorder prediction 87 101 - -
Accr2g02459 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Accr2g02459 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Accr2g02459 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Accr2g02459 318 SUPERFAMILY RNA-binding domain, RBD 109 290 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02459 Accr-Chr2 60010691 60012121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02459 111 288 Eukaryotic Initiation Factors Gene Family AT1G49760 31.868 3.10e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02459 - - qsa:O6P43_009680 400.593