Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02449 ATGGACGAGAATATCGAAGTTCCTACCTTCTTTCTGTGCCCAATCTCCCTGGAAATCATGAAGGATCCGATCACCGTCACCTCCGGTATCACCTACGACAGAGAGAGCATCGAAAAATGGCTCTTCTCCGGCAAAAACAACACCTGCCCAGTTACAAAACTACCCCTCTCCGTATCAGACTCCTCCGAGCTCGTTCCCAACCACAACCTCCGCCGTCTGATTCAATCCTGGTGTACCATCAACGCATCTCACGGCATCCAGAGGATCCCGACGCCCAAACCTCCCGTCACCAAAACCCAAGTAGCCAAAATCATCAAAGACGCTTCTCAATCTTCTCACTCACCTCTGAAATCCCTCCAAACACTCAAATCCATTGCTTCCGAGAGCGACGCCAACAAACGTACCATAGAAGCCGCCGGCGCCCTTGATTACTTAGCATCCATCGTACTGCGTCACACAAATTTCTCATACACAGCTGAAGACACTAGCCTCGATGAAGATGGCTTTGAGCTGAAAACAAGCGGAAGCGACGAAGCCTTAAGCATCCTCCATAGCCTCCACCTGTCCGACTCCGGCTTTAAAACTCTCGTAACCTTCGAAAATGGATCATTCATTGACTGCTTAACCAGAATCATGCAGAGAGGGTTCTACGAGTCACGAGCTTACGCGGTCTTATTGTTAAAATCCATGTTTGAAGTGGCTGATCCAACGGTTTTATCCCATTTAAAACCTGAAATGTTTGTTGAGTTGGTTCAACTTTTGAAAGACCAGATATCTCCGCAGGCTTCCAAGGCTGCTTTGAGAACACTGATCCAAATATGTCCATGGGGGAGAAACAGAACAAGAGCAGTCGAAGCAGGCGGCGTAACAGTGTTGATAGAGCTTCTTTTGGATTGTAAAGAGAGGAAGCCATGTGAGATGATGATGGTGTTGTTGGAGATGTTGTGTGGGTGTGCTGAGGGCAGGGCTGAGTTACTGAGTCATGGCGCCGGGATCGCCGTAGTTTCGAAGAAGATCCTAAGGGTGTCGACGATGGCGAATGACAGGGCGGCGAGGATTTTGTTGTCTATTGCCAAGTTCTCTGCGACTACAAGCGTTTTGCAGGAAATGTTGCAGGTTGGGGTGGTGGCGAAGCTGTGTTTGGTGCTTCAGGTGGAGAGCGGGAAAAAGGCTCAGGAGAAAGCTAGAGAGATTCTAAGAATGCATGCTCGGGCTTGGAGGAATTCTCCATGCATACCAACCAATCTGCTTTCTTCTTACCCGAATTGA 1269 0.4886 MDENIEVPTFFLCPISLEIMKDPITVTSGITYDRESIEKWLFSGKNNTCPVTKLPLSVSDSSELVPNHNLRRLIQSWCTINASHGIQRIPTPKPPVTKTQVAKIIKDASQSSHSPLKSLQTLKSIASESDANKRTIEAAGALDYLASIVLRHTNFSYTAEDTSLDEDGFELKTSGSDEALSILHSLHLSDSGFKTLVTFENGSFIDCLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKPEMFVELVQLLKDQISPQASKAALRTLIQICPWGRNRTRAVEAGGVTVLIELLLDCKERKPCEMMMVLLEMLCGCAEGRAELLSHGAGIAVVSKKILRVSTMANDRAARILLSIAKFSATTSVLQEMLQVGVVAKLCLVLQVESGKKAQEKAREILRMHARAWRNSPCIPTNLLSSYPN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02449 422 CDD RING-Ubox_PUB 8 60 IPR045210 -
Accr2g02449 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Accr2g02449 422 PANTHER WDSAM1 PROTEIN 4 413 IPR045185 GO:0061630
Accr2g02449 422 SMART Ubox_2 10 77 IPR003613 GO:0004842|GO:0016567
Accr2g02449 422 SUPERFAMILY RING/U-box 5 84 - -
Accr2g02449 422 Gene3D - 100 410 IPR011989 -
Accr2g02449 422 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Accr2g02449 422 SUPERFAMILY ARM repeat 118 408 IPR016024 -
Accr2g02449 422 FunFam RING-type E3 ubiquitin transferase 1 87 - -
Accr2g02449 422 ProSiteProfiles U-box domain profile. 6 84 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02449 Accr-Chr2 59943982 59945250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02449 1 421 U-box Gene Family AT2G35930 55.765 2.83e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02449 - - gmx:100809123 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02449 2 59943982 59945250 Accr2g02449 2 59943982 59945250 ECH