Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02420 ATGGAACCAATCCAAAACATCAACGCGTGCAATAAACGCGCTTTCAACCCAGAGGAAGAAGAGGAGGACCAAAAGGAGGCCATGTTCGAGAAGGCGTTAACGCCCAGCGACGTGGGGAAGCTGAACCGTCTGGTGATCCCGAAACAGCACGCCGAGAAGTACTTTCCACTAGGAGGCGGTGGGGCCGCCGGCGACACCAAGGGCGTGTTGCTGAGTTTCGAGGACGAGTCCGGCAAGTTCTGGCGCTTCCGATACTCTTATTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGCTGGAGCCGTTACGTTAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTCCTTTCACCGTCACCTTACAGACACTCACCGCCTTTTCATCTGCTGGAGGCGCCGCCACCCTCATGCGGGTCCACCAGTCACCAGAGTTGGGCATGGCGCGGTGGATGTAGGATGGACCACCCCTACGCCTTTCTATTCGGGCCATACTTATCCCGACCCTCAGCTTTTGTCACACGAACCTCAAACCCTTCCTGCACCAGGAAGAGGTTTACCAGCTCAGAGGACGGTGGTGGGAAGCAGTTCAAGTAAGGTACTGCGACTGTTCGGAGTAAACATGGAATGCCAAGTAGAAGCAGATGAATCAGGACCGTCCACATGCCACAACTCCTCCAACGTCTCATCATCAACTACCCTTAACCATTTCTACCATTCTGATTATCCTCATCTTTCTTATGCTTCCATTCCTCACCCCCACATGGTACGTCAACAATCATACTTCTGA 789 0.5374 MEPIQNINACNKRAFNPEEEEEDQKEAMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGGGGAAGDTKGVLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFHRHLTDTHRLFICWRRRHPHAGPPVTRVGHGAVDVGWTTPTPFYSGHTYPDPQLLSHEPQTLPAPGRGLPAQRTVVGSSSSKVLRLFGVNMECQVEADESGPSTCHNSSNVSSSTTLNHFYHSDYPHLSYASIPHPHMVRQQSYF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02420 262 CDD B3_DNA 28 125 IPR003340 GO:0003677
Accr2g02420 262 SMART B3_2 29 135 IPR003340 GO:0003677
Accr2g02420 262 Gene3D - 23 139 IPR015300 -
Accr2g02420 262 ProSiteProfiles B3 DNA-binding domain profile. 29 135 IPR003340 GO:0003677
Accr2g02420 262 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 222 IPR044800 GO:0003700
Accr2g02420 262 Pfam B3 DNA binding domain 29 134 IPR003340 GO:0003677
Accr2g02420 262 SUPERFAMILY DNA-binding pseudobarrel domain 25 135 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02420 Accr-Chr2 59535029 59536235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02420 22 222 RAV Transcription Factor Family AT5G06250 51.628 1.36e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr2g02420 B3 3.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02420 K09287 - gmx:100795470 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02420 2 59535029 59536235 Accr5g02125 5 47607049 47608623 CCT
Accr2g02420 2 59535029 59536235 Accr2g02420 2 59535029 59536235 ECH