Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02340 ATGCGTCCCAATAATACTCAGTCTAGTTCTGCTAGCTCTCCTACCGGAGCAAGCAGCAGCAGCGGTGCAGCCACCGGGCGTCACCCGGTGTACCGGGGGGTGAGGCGTCGGACCAGCGGGAAATGGGTGTCTGAAATTCGCGAGCCCAGGAAGCCCAATAGGATATGGTTAGGTACATTCCCTACCCCTGAAATGGCTGCCATTGCCTATGACGTGGCTGCCCTTGCTCTCAAGGGCAGCGACGCTGACCTTAACTTCCCCGACTCCGCTTCTTCGCTGCCCGTCCCGGCCTCTCGCTCTGCCAATGATATTCAGATTGCTGCTGCCAGCGCCGCGGCCGCAGCCGGGGCAGCCAGGGATGCCTTGTCCGGGCCTAATGAACAAGGCAATGCTAATGTTAATGTATCCGAGGAACAACAATCTGGTGGGGCTGAGTTTGTGGACGAGGATTTGATCTTTGATTTACCTAATGTTCTTGCCGATATGGCTGAAGGAATGCTCCTCACTCCTCCCCCTCTGGATTTTACTGGCAACAACGATGCTGATGGTTCTGCCGGAGGAAACATTGGCGGTGATGATCAAAAACTTTGGAAATTTCCATAA 603 0.5489 MRPNNTQSSSASSPTGASSSSGAATGRHPVYRGVRRRTSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGSDADLNFPDSASSLPVPASRSANDIQIAAASAAAAAGAARDALSGPNEQGNANVNVSEEQQSGGAEFVDEDLIFDLPNVLADMAEGMLLTPPPLDFTGNNDADGSAGGNIGGDDQKLWKFP 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02340 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 24 198 IPR045277 GO:0003700
Accr2g02340 200 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Accr2g02340 200 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Accr2g02340 200 MobiDBLite consensus disorder prediction 171 200 - -
Accr2g02340 200 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Accr2g02340 200 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Accr2g02340 200 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Accr2g02340 200 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Accr2g02340 200 MobiDBLite consensus disorder prediction 125 141 - -
Accr2g02340 200 SUPERFAMILY DNA-binding domain 30 89 IPR016177 GO:0003677
Accr2g02340 200 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Accr2g02340 200 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Accr2g02340 200 MobiDBLite consensus disorder prediction 1 45 - -
Accr2g02340 200 MobiDBLite consensus disorder prediction 121 141 - -
Accr2g02340 200 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02340 Accr-Chr2 58690993 58691595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02340 26 200 AP2-EREBP Transcription Factor Family AT2G36450 65.193 3.19e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr2g02340 AP2 5.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02340 - - tcc:18598164 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02340 2 58690993 58691595 Accr5g02196 5 48170872 48171423 CCT
Accr2g02340 2 58690993 58691595 Accr2g02340 2 58690993 58691595 ECH