Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02313 ATGGATTGGGATTGGAGCATAAGACCTTCTGCTCCTCAAGCTGAGTCGTCCTACTCTGGCTTCCTCTATAACTTTAACTACACTCCATATCCAGGAATGGGAGTGAAACAACCAGCAATGACAGAGGGTGAGCGACAAGGATTGACTCCGGGAATGGACATAGTCAACAATGGGAAGCAAGAACAACAGCAGAAGAGGAAGAAGAGATTAACAAGCAAGCAGGTAGAGTCACTGGAGAAGAGTTTTGAGAAGGAGAAAAAATTGGACGCAGATAGGAAGATGAAGCTGTCGAAGGAGGTAGGGTTGCCGCCTCGCCAAGTAGCTGTTTGGTTCCAAAACAGGAGGGCTAGGTGGAAGGCAAAGCAGCTTGAGCACTTGTATGATGCTCTCAAACAGGACTTTGATGCCATGTACAAGGAAAAACAGAAGCTTCAAGAAGAGGTAACAATATTAAAAGCCATGCTGAGAAGGGAAGAATCTAGGACGACGCAGGAATCTGCTGACTGTCTACAAACCTGGGGAAGAACGTAG 531 0.4652 MDWDWSIRPSAPQAESSYSGFLYNFNYTPYPGMGVKQPAMTEGERQGLTPGMDIVNNGKQEQQQKRKKRLTSKQVESLEKSFEKEKKLDADRKMKLSKEVGLPPRQVAVWFQNRRARWKAKQLEHLYDALKQDFDAMYKEKQKLQEEVTILKAMLRREESRTTQESADCLQTWGRT 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02313 176 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 165 IPR045224 GO:0003700
Accr2g02313 176 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Accr2g02313 176 CDD homeodomain 70 122 IPR001356 GO:0003677
Accr2g02313 176 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Accr2g02313 176 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Accr2g02313 176 SMART HOX_1 63 125 IPR001356 GO:0003677
Accr2g02313 176 Coils Coil 113 161 - -
Accr2g02313 176 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Accr2g02313 176 MobiDBLite consensus disorder prediction 34 84 - -
Accr2g02313 176 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Accr2g02313 176 MobiDBLite consensus disorder prediction 60 84 - -
Accr2g02313 176 Gene3D - 25 123 - -
Accr2g02313 176 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Accr2g02313 176 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02313 Accr-Chr2 58351867 58352698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02313 12 151 Homeobox Transcription Factor Family AT5G03790 50.000 8.06e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr2g02313 Homeodomain 9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02313 - - pcin:129303220 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr5g02213 5 48400298 48401537 Accr2g02313 2 58351867 58352698 CCT
Accr2g02313 2 58351867 58352698 Accr2g02313 2 58351867 58352698 ECH