Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02304 ATGGCGGATACTACGTCGGTCGCCACCGCTGCTGCTTCGCTTTACGTCGGCGATCTTCACGCTGAAATCACCGATGTTCAGCTGGTTGAAATATTCTCCGAGTTTAAGAGCCTTGCATCCGTTCGGGTCTGTCGGGACTCCTCTACCGGCAGGTCGCTCTGTTACGGCTACGTCAACTTCGCCTCTCCTCAAGATGCAATTCGTGCTATTGAGGTGAAGAATCATTCTATACTGAATGGAAAAGCGATAAGGATCATGTGGTCAAATCGTGATCCTGATGCAACTAAAAGTGGCAAAGGGAATTTGTTTGTTAAGAACCTACCTGAATCAATAGAAAATGTGGGATTACAAGATTTGTTTCAAAAGTTTGGCACTATTTTGTCCTGCAAAGTTGTCATGTCTGAAGATGGAAAAAACAAAGGATATGGCTATGTTCAATTTCAGTCAGAGGAATCTGCAAATTCTGCCATCGAGGAGCTGAATGGCTCTACTGTTAAAGACAAGAAAATCTATGTTGGAAAGTTTGTCAAAAAAGATGACCGCATTTTGCCAAATCCTGATGCGAAATATACAAATTTATATTTCAAGAATTTGGACCCCAAAATTACTGAAAAGCTTCTACAGGAAAAGTTCTCGTCTTTTGGGAAAATTGTTAGCTTAGTAATTGCGAAGGATGACAGCGGGATTTCGAAGGGTTTTGGCTTTGTGAACTATGATAACCAAGATGATGCTAAACGGGCAATGGAAGGAATGAATGGATCACAACTTGGTTCAAAGATTCTATACGTAGCCAGGGCACAAAAGAAGGCCGAGCGTGAGATTATTTTGCACCATCAGTTCGAGGAGAAACGCAAGGAACAAATCTCAAAATACAAGGTATCAAATGTTTATGTGAAGAACATTGATGATGACGTTAGTGATGAAGAACTACGGAATCTTTTTCGTGCATGTGGCCCAATAACATCTGCAGTAGTTATGCGAGATAGCAAAGGTATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCACCCCTGAGGAGGCTAATAAAGCTGTGAGCACATTTCATGGATACATGTTTCATCGCAAACCATTATATGTTGCTATTGCTCAAAGGAAGGGGGATAGGCAAACACAATTGCAGATTCAGCATGCACAGAGAATGGCAGGACTATCTAGACCTTCCATAGCTGTTCTTCCTGGCGGATATTCTCCTTATTATTATGCAGCTAGGGGGGCGGTACCACAGGTTCCTTCTCGACCTGGGCTAATGTATCAACCTTTGGGGTTGACACATGGATGGAGGGCTAACAGCTTTGCACCTCCTACCAGACCATATCAACAGCCACTAGCTCCTTTGGTTTCCAATTCTACGAGGCAAAATAGGCAAAACAGGGGCAGGATGAATGGGCTAACAATCTCACAAGGAAATCTTCACTCCGGCACACATGTGCCACAATTGATGCGTCAGCCTTTCCAGTCAGTGAACTCTTCAAAAGAATTAAGTACACAACAGCGAGCTGGGCCGACAAAGTATGTGCCCAGCGGGCTCCAGTCTGAATTGGAGAGAGTATCTGGAGTCACCTCGGGTGGTAGCTCTTCAGTAGGATCTTCGGGATCAGAAGTGCTGCATAGCATGCTTGCTGCTGCTACTCTGGAGCAGCAGAAACAGATACTCGGCGAGCAACTGTACCCTCTTGTCGTTAAACTCAAGCCGGGCCTAGCAGCGAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAGTCTCCAGAGTCTCTTACTGCCAAGGTGGAGGAAGCCGTGCAGGTGCTAAAGAACTCCAAGACCAAAGTCTCTGGCCAGGATGTACTTCATCCAAATTTCCTTTCTGCCGGAGTTGCGGTGAACTGA 1908 0.4507 MADTTSVATAAASLYVGDLHAEITDVQLVEIFSEFKSLASVRVCRDSSTGRSLCYGYVNFASPQDAIRAIEVKNHSILNGKAIRIMWSNRDPDATKSGKGNLFVKNLPESIENVGLQDLFQKFGTILSCKVVMSEDGKNKGYGYVQFQSEESANSAIEELNGSTVKDKKIYVGKFVKKDDRILPNPDAKYTNLYFKNLDPKITEKLLQEKFSSFGKIVSLVIAKDDSGISKGFGFVNYDNQDDAKRAMEGMNGSQLGSKILYVARAQKKAEREIILHHQFEEKRKEQISKYKVSNVYVKNIDDDVSDEELRNLFRACGPITSAVVMRDSKGISKGFGFVCFSTPEEANKAVSTFHGYMFHRKPLYVAIAQRKGDRQTQLQIQHAQRMAGLSRPSIAVLPGGYSPYYYAARGAVPQVPSRPGLMYQPLGLTHGWRANSFAPPTRPYQQPLAPLVSNSTRQNRQNRGRMNGLTISQGNLHSGTHVPQLMRQPFQSVNSSKELSTQQRAGPTKYVPSGLQSELERVSGVTSGGSSSVGSSGSEVLHSMLAAATLEQQKQILGEQLYPLVVKLKPGLAAKITGMLLEMDNGELLLLLESPESLTAKVEEAVQVLKNSKTKVSGQDVLHPNFLSAGVAVN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02304 635 CDD RRM4_I_PABPs 294 371 - -
Accr2g02304 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Accr2g02304 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Accr2g02304 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Accr2g02304 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Accr2g02304 635 Gene3D - 101 180 IPR012677 -
Accr2g02304 635 SMART rrm2_1 192 264 IPR003954 GO:0003676
Accr2g02304 635 SMART rrm2_1 101 173 IPR003954 GO:0003676
Accr2g02304 635 SMART rrm2_1 295 367 IPR003954 GO:0003676
Accr2g02304 635 FunFam Polyadenylate-binding protein 277 385 - -
Accr2g02304 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Accr2g02304 635 FunFam Polyadenylate-binding protein 97 181 - -
Accr2g02304 635 CDD RRM2_I_PABPs 98 174 IPR045305 -
Accr2g02304 635 Pfam Poly-adenylate binding protein, unique domain 545 610 IPR002004 GO:0003723
Accr2g02304 635 Gene3D - 3 100 IPR012677 -
Accr2g02304 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Accr2g02304 635 MobiDBLite consensus disorder prediction 492 511 - -
Accr2g02304 635 SUPERFAMILY PABC (PABP) domain 479 621 IPR036053 GO:0003723
Accr2g02304 635 SUPERFAMILY RNA-binding domain, RBD 12 95 IPR035979 GO:0003676
Accr2g02304 635 SMART poly_2 550 613 IPR002004 GO:0003723
Accr2g02304 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Accr2g02304 635 PANTHER RNA BINDING PROTEIN 286 498 - -
Accr2g02304 635 SMART rrm1_1 192 264 IPR000504 GO:0003723
Accr2g02304 635 SMART rrm1_1 101 173 IPR000504 GO:0003723
Accr2g02304 635 SMART rrm1_1 295 367 IPR000504 GO:0003723
Accr2g02304 635 SMART rrm1_1 13 86 IPR000504 GO:0003723
Accr2g02304 635 Gene3D - 276 385 IPR012677 -
Accr2g02304 635 SUPERFAMILY RNA-binding domain, RBD 101 271 IPR035979 GO:0003676
Accr2g02304 635 Gene3D - 536 625 - -
Accr2g02304 635 FunFam Polyadenylate-binding protein 536 622 - -
Accr2g02304 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Accr2g02304 635 MobiDBLite consensus disorder prediction 492 512 - -
Accr2g02304 635 FunFam Polyadenylate-binding protein 4 96 - -
Accr2g02304 635 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 611 IPR006515 GO:0003723
Accr2g02304 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Accr2g02304 635 Gene3D - 181 274 IPR012677 -
Accr2g02304 635 SUPERFAMILY RNA-binding domain, RBD 289 389 IPR035979 GO:0003676
Accr2g02304 635 FunFam Polyadenylate-binding protein 182 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02304 Accr-Chr2 58270384 58274887 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02304 12 633 Eukaryotic Initiation Factors Gene Family AT2G36660 51.360 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02304 K13126 - gmx:100779547 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02304 2 58270384 58274887 Accr2g02304 2 58270384 58274887 ECH