Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02302 ATGGCGGAATCGGTTTCTGGTGATTCCTTCAACCACACTCCGGTACCGGCACCGGCTTCTAATGACAGAAGTAGGGCTGATGAGGCGGAAGACGAAGTTCCAGAAGAAAAAGTTCCGGCACCGGCACCGGCACCGGATCACAAAAGTTGGGCTGATGAGGCGGAAGACGAAGTTCCAGAAGAAAAATTTCCGGCTCCGGCTTCTGATCACAAAAGTTGGGCTGATGAGGCGGAAGAAAAAGTTCCAGAAGAAACAAGTGAGCCCACTGGGAGTTCGTCGACGGTCTCGTCGCTTAAAGTTCATGAATTAGCAATCGACGAGAAAAAGAAGAGTCCTAAGGTTTTGGACGAACCCGATGATTCCAATATCCAAGCGGTTACATCGGGCGATTCTCCGTATACTTCAGCGAGTACATTTGAAGATTTAAATCTATCGCCGGAGTTGCTAAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAGATTCAAGCTATCAGTTTGCCGATGATTTTGAACCCTCCTCACAAGGATTTGATCGCTCAGGCACATAACGGGTCTGGCAAGACAACTTGTTTTGTGCTTGGGATGCTGAGTCGTGTTGATCCTAAGGTGCAAGCTCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGAATATGGAAGTTCTTCTAAAGATGGGAAGGTACACGGGGATCGGTTCTGAATGTGCCATTCCCACCGACAGCAGAGATTATATTCCAATAACAAAACGACCACCCATAATGGCTCAAGTAGTGATTGGGACTCCTGGCACGATTAAGAAGTGGATGTCATCTAAGAAGCTGGGTGTCAGCAGATTAAAAATTTTAGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAGAGATGATTCCTTGAGGATAATGAAGGAAATAGAAAAAGTCAATCTGTACTGTCAGGTTCTTCTTTTTTCGGCTACCTTTAACGACACTGTCAGGAATTTTGTTTCAAGGGTAGTTAAGAAAGATCATAATCAACTTTTTGTGAAGAAAGAAGAACTGTCTTTACAGGCAGTGAAGCAGTACAAGGTGAACTGTCCTGATGAGCTCTCTAAGATTTATGTGATCAGAGATTACATATTTGAGATAGGAGAGAATGTTGGGCAAACTATTGTATTTGTGCGCACAAGAAACAGTGCAAGCATGTTGCATAAATCACTTGAGGATTTAGGTTACGGGGTTACTTCCATACAAGGTGCTCTTGACAATAATGAGAGAGACAAGATTGTTAAGGAGTTCAGGGATGGTTTGACTCAAGTTCTTATATCTACTGATGTTCTTGCTCGAGGTTTTGATCAACAACAGGTGAATTTGGTTATCAATTACGATCTTCCTGTGAAACACACTGCTGAATATACCTGTGAACCAGAGCCTGATTATGAGGTATATTTGCATAGGGTTGGTAGGACAGGACGTTTTGGGCGCAAGGGTGCTGTATTTAACTTGATATGTGGTGAAAGGGATGAAAATCTGATGGAAAAAATTGAGAAACATTTTGGCACCCGGGTAACTGAGGTCCAACAAAGAAATGTTGATGATTATAAACGCGCTCTTAAAGAGGCTGGTTTACTGCAATAA 1641 0.4308 MAESVSGDSFNHTPVPAPASNDRSRADEAEDEVPEEKVPAPAPAPDHKSWADEAEDEVPEEKFPAPASDHKSWADEAEEKVPEETSEPTGSSSTVSSLKVHELAIDEKKKSPKVLDEPDDSNIQAVTSGDSPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNMEVLLKMGRYTGIGSECAIPTDSRDYIPITKRPPIMAQVVIGTPGTIKKWMSSKKLGVSRLKILVFDEADQMLAEDGFRDDSLRIMKEIEKVNLYCQVLLFSATFNDTVRNFVSRVVKKDHNQLFVKKEELSLQAVKQYKVNCPDELSKIYVIRDYIFEIGENVGQTIVFVRTRNSASMLHKSLEDLGYGVTSIQGALDNNERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTCEPEPDYEVYLHRVGRTGRFGRKGAVFNLICGERDENLMEKIEKHFGTRVTEVQQRNVDDYKRALKEAGLLQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02302 546 Gene3D - 116 354 IPR027417 -
Accr2g02302 546 MobiDBLite consensus disorder prediction 101 117 - -
Accr2g02302 546 MobiDBLite consensus disorder prediction 1 138 - -
Accr2g02302 546 CDD DEADc_DDX19_DDX25 144 343 - -
Accr2g02302 546 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 543 IPR001650 -
Accr2g02302 546 CDD SF2_C_DEAD 360 504 - -
Accr2g02302 546 Gene3D - 357 539 IPR027417 -
Accr2g02302 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 512 IPR027417 -
Accr2g02302 546 MobiDBLite consensus disorder prediction 48 85 - -
Accr2g02302 546 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 166 IPR014014 GO:0003724
Accr2g02302 546 SMART helicmild6 402 495 IPR001650 -
Accr2g02302 546 Pfam DEAD/DEAH box helicase 163 335 IPR011545 GO:0003676|GO:0005524
Accr2g02302 546 MobiDBLite consensus disorder prediction 121 138 - -
Accr2g02302 546 Pfam Helicase conserved C-terminal domain 383 495 IPR001650 -
Accr2g02302 546 MobiDBLite consensus disorder prediction 23 37 - -
Accr2g02302 546 SMART ultradead3 157 363 IPR014001 -
Accr2g02302 546 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 93 517 - -
Accr2g02302 546 MobiDBLite consensus disorder prediction 1 18 - -
Accr2g02302 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 347 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02302 Accr-Chr2 58238380 58244747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02302 138 527 Eukaryotic Initiation Factors Gene Family AT1G72730 36.616 9.21e-68 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02302 K18655 - qsa:O6P43_010208 742.265