Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02293 ATGAGCAGCAACAACAACAACGCTGATGAATTGCAAGCCCGTATAGACTACTTTGTGAGTCCTCTCATCATCTCCGGCGCCGGAATCATCTGCTCCTGCATCGCCCTAGCCACATACCACTTTATCCTCTTTAGGTTCTGCCTTCAAAACCGAATGCGATTGCAGCATATGGCGGCTCACCCAATAAGTCCTCCGGCCGACAACATTCACTGCGGCGTCGACCCTGAAGTCCTCAAGAAAATCCCAATTCTGCCTTACTCTCATAAAAAAGGTGGCGCCTTTCGATTGGACCAAACTGAATGCGCTATTTGCTTAGGCGAATTGCTTGAAGGAGAAAAGGTTCGATTATTGCCTTCTTGTTGCCATGCTTTTCACATAGCTTGTATCGATCTCTGGTTCGATCAAAATTCCAATTGTCCCATTTGTCGATCCCCTTTAGTTATTCCCCCTCCGTCACGGTCGCCGGTGGCGGCTTCAGAAACTACTGTTGCTGACGCTGAAGGAATAAGGGTGGTGTCAACAGTGTCTCGTGTTCAAAGTGATCGTAATTCCGGTTCGACGACTTCCCAATCCCCTCTCGGCGGCGCCGCCACGCTTCAGCACACTCTGTCATCTGTGTCGTATCGTCACGAGCAGGAGAAGCCTTTGGATTCGATGACGGGGATGAGGAGGTCTCTGTCCATGGAGCATTTGCCGTATGCTTCTGTTTGCATACAGAGAGGCGAGGAACATAATAAAGCAGCTGCTTCTTCTTCATCATCGTCTTCTTCGGCGTCTGTGGCTGCAAGGATTGGGATTGCACGTGCTAAAACTATTGATCAGGTTTCGTCCATGTTGATGATGTCTTTCGCTCCGTTTCGTAACAGTAGAAATGACAGATCTAAAGGCATTCTACCGAACTGA 903 0.4895 MSSNNNNADELQARIDYFVSPLIISGAGIICSCIALATYHFILFRFCLQNRMRLQHMAAHPISPPADNIHCGVDPEVLKKIPILPYSHKKGGAFRLDQTECAICLGELLEGEKVRLLPSCCHAFHIACIDLWFDQNSNCPICRSPLVIPPPSRSPVAASETTVADAEGIRVVSTVSRVQSDRNSGSTTSQSPLGGAATLQHTLSSVSYRHEQEKPLDSMTGMRRSLSMEHLPYASVCIQRGEEHNKAAASSSSSSSSASVAARIGIARAKTIDQVSSMLMMSFAPFRNSRNDRSKGILPN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02293 300 CDD RING-H2_EL5-like 100 143 - -
Accr2g02293 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 147 IPR013083 -
Accr2g02293 300 SMART ring_2 101 142 IPR001841 -
Accr2g02293 300 Pfam Ring finger domain 100 143 IPR001841 -
Accr2g02293 300 SUPERFAMILY RING/U-box 96 152 - -
Accr2g02293 300 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Accr2g02293 300 MobiDBLite consensus disorder prediction 175 196 - -
Accr2g02293 300 PANTHER RING-H2 FINGER PROTEIN ATL16 17 299 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02293 Accr-Chr2 58193599 58194501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02293 22 144 C3H Transcription Factor Family AT1G04360 34.074 3.76e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02293 - - pcin:129292926 339.732