Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02253 ATGGAGGTCACAGGCCAAGAACTTGTGGTGTGGAATAAGGATCATCAAGCCCAACAAGTCATGAAAGGCAAGCGTACCAAGCGTTCCAGGCTACCGTCGCCGCTCAGGCTATCCATGGCTTCTTCTTCTTCCAGCGCCGGCGGAAGAGCCAGCACCGACGACCATTCCGGCAGATCATCATCAGTAGTAGATAATATGGCTACAACCTCCACTGATCCTTTGAGGGTGAGTACTGAAGAAGAGGACATGGCTAAGTGTTTGATCCTTCTGGCTCAAGGCCATAATACCCGTCGCGAGCCCTCTTCCCATAACAACATCGACGATAACAAGACTTCCTCTGGGCTATACGTTTATCAGTGCAAGACATGTGATCGATGCTTTCCTTCGTTCCAAGCGCTTGGTGGTCACAGAGCCAGCCACAAGAAACAAAAGCCCAACAATTCTCAAGAAAAGCTTCAATCAGTTGCATTTGCAAACCAAGAGGCTCATCATGACCAACCCTATGACCCCACCGGCACAAGTTTCGTCCTTTCCTTGCAGATATCAAATAGTAGCGTTCATAATAAGTCGAAGGTACACGAGTGTTCTATTTGTGGGGCTGAGTTTTCTTCTGGGCAAGCTTTAGGGGGTCATATGAGGCGTCACAGAACATTGGTGAATAATTCTTCAACGTGTACGACGAGCACAGGGAATAATAATTCTCAACCCCAGAAAGCCAACAAGCCCGCAACCAAGAATGCTTTGGGGTTGGATTTGAATCTTCCGGCACCAGAAGATGATCACAGAGAATCCAAGTTGCCTTTTCAGTCTAAGGAAAATGTTTTTGTTTTCTCTGCGTCTTCTTTGGTGGATTGCCATTATTGA 864 0.4722 MEVTGQELVVWNKDHQAQQVMKGKRTKRSRLPSPLRLSMASSSSSAGGRASTDDHSGRSSSVVDNMATTSTDPLRVSTEEEDMAKCLILLAQGHNTRREPSSHNNIDDNKTSSGLYVYQCKTCDRCFPSFQALGGHRASHKKQKPNNSQEKLQSVAFANQEAHHDQPYDPTGTSFVLSLQISNSSVHNKSKVHECSICGAEFSSGQALGGHMRRHRTLVNNSSTCTTSTGNNNSQPQKANKPATKNALGLDLNLPAPEDDHRESKLPFQSKENVFVFSASSLVDCHY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02253 287 MobiDBLite consensus disorder prediction 221 244 - -
Accr2g02253 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 215 IPR013087 -
Accr2g02253 287 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Accr2g02253 287 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Accr2g02253 287 MobiDBLite consensus disorder prediction 35 74 - -
Accr2g02253 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Accr2g02253 287 MobiDBLite consensus disorder prediction 221 242 - -
Accr2g02253 287 SMART c2h2final6 118 140 IPR013087 -
Accr2g02253 287 SMART c2h2final6 193 215 IPR013087 -
Accr2g02253 287 SUPERFAMILY beta-beta-alpha zinc fingers 117 146 IPR036236 -
Accr2g02253 287 Gene3D Classic Zinc Finger 94 170 - -
Accr2g02253 287 Gene3D Classic Zinc Finger 171 248 - -
Accr2g02253 287 SUPERFAMILY beta-beta-alpha zinc fingers 190 216 IPR036236 -
Accr2g02253 287 Pfam C2H2-type zinc finger 117 143 - -
Accr2g02253 287 Pfam C2H2-type zinc finger 192 216 - -
Accr2g02253 287 PANTHER ZINC FINGER PROTEIN ZAT5 52 265 - -
Accr2g02253 287 MobiDBLite consensus disorder prediction 16 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02253 Accr-Chr2 57498062 57498925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02253 20 287 C2H2 Transcription Factor Family AT5G03510 42.361 1.79e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g02253 zf-C2H2_6 1.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02253 - - ccaj:109798139 246.514