Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02200 ATGGGTAACATAGGAAGTAGCAGCGCCAACGGCCGTCGGAGAAGCCATAGCAGACGGAGTCATCCACCTCCGCCACCGCCGGTTAGGCCGCAGCCAGAAATCGCGCCGAATCGGTCTGTTCATCCAGCATCTACACCTCAGAGATCGCAATCCCCAAACTCGAATCCTTCCCCGTATTTCCAGTACCCAGGTCACTATTCCGCTCCCCATCAGGCTATGCCGGCGCCTTTGCCGGCTCCTCTCGATCACCACCATCGTGCGAGGCCTCATCCACAAATGGACCCGTCATGGACGGGTTCTAGTTACCATTGCGGGCCTGCTATGGCTCCGCCTACACCATATGTAGAGCATCAGAAGGCGGTTACCATAAGGAACGATGTTAATGTCAAGAAGGAGACTCTAAGGATTGAACCCGATGAGCAAAATCCTGGGAGGTTCCTCGTTGCTTTCACATTCGATGCCACCGTTGATGGGAGCATCACCATTCTTTTCTTTGGTAAAGAAGATGATAGCTGCTTCCTCACACCAATGAAGCAAAATATTCTTGCCCCTGTAACTGTAAGTTTCCAGCAAGGTCTTGGGCAGCAGTTTAAGCAGCCAATTGGAACTGGCATTGACTTTTCAATCTTTGAGGAGTCAGAATTATCAGAAGTGGGTGTAATAGATGTGTTCCCTCTAGCAGTGAAGGCAGATGCTTCCGGTGGTGAACAAGATGGATCAAATGAAAATTTAACATCTGGTAACAGAAACTCTCAGATAACTCTGGCAGCATTTGAGAAGGAGAAAGGAAAATTCCGTGTAAAGGTAGTTAAGCAGATCTTATGGGTAAATGAAATGAGGTATGAACTACAGGAGATATATGGTATTGTTAATTCAGTGGAGAATGACTTGGATGAGAATGATTCAGGAAAGGAGTGTGTTATCTGCCTCTCAGAGCCACGAGACACAACTGTTCTACCCTGCCGACACATGTGCATGTGTAGCGGGTGTGCTCAGGTTCTGAGGTTTCAGGCGAATAGATGCCCAATTTGCAGACAGCCAGTTGAGAGGCTTCTGGAGATAAAGGTCAATAATGAAAACCGGCCTGAGGAATGA 1095 0.4822 MGNIGSSSANGRRRSHSRRSHPPPPPPVRPQPEIAPNRSVHPASTPQRSQSPNSNPSPYFQYPGHYSAPHQAMPAPLPAPLDHHHRARPHPQMDPSWTGSSYHCGPAMAPPTPYVEHQKAVTIRNDVNVKKETLRIEPDEQNPGRFLVAFTFDATVDGSITILFFGKEDDSCFLTPMKQNILAPVTVSFQQGLGQQFKQPIGTGIDFSIFEESELSEVGVIDVFPLAVKADASGGEQDGSNENLTSGNRNSQITLAAFEKEKGKFRVKVVKQILWVNEMRYELQEIYGIVNSVENDLDENDSGKECVICLSEPRDTTVLPCRHMCMCSGCAQVLRFQANRCPICRQPVERLLEIKVNNENRPEE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02200 364 MobiDBLite consensus disorder prediction 38 61 - -
Accr2g02200 364 Pfam Zinc finger, C3HC4 type (RING finger) 304 350 - -
Accr2g02200 364 SMART ring_2 306 344 IPR001841 -
Accr2g02200 364 PANTHER MAHOGUNIN 1 359 IPR045194 GO:0061630
Accr2g02200 364 ProSiteProfiles Zinc finger RING-type profile. 306 345 IPR001841 -
Accr2g02200 364 PIRSF SBP1_RNase_bind 245 356 IPR017066 -
Accr2g02200 364 PIRSF SBP1_RNase_bind 17 96 IPR017066 -
Accr2g02200 364 MobiDBLite consensus disorder prediction 1 98 - -
Accr2g02200 364 SUPERFAMILY RING/U-box 305 351 - -
Accr2g02200 364 CDD mRING-HC-C3HC5_MGRN1-like 304 345 IPR045195 -
Accr2g02200 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 355 IPR013083 -
Accr2g02200 364 FunFam probable E3 ubiquitin-protein ligase LOG2 290 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02200 Accr-Chr2 56870763 56873278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02200 103 325 C3H Transcription Factor Family AT3G09770 63.043 9.43e-97 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02200 - - fve:101309567 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02200 2 56870763 56873278 Accr2g02200 2 56870763 56873278 ECH