Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02193 ATGCAAATGCTCTCTGGTGACCCCTTTTCCTTATCCTCTTCCATCGGAGCCTTCGCTCCCGACCCGAATCCAAACCCTAACCCTAAACTCAACCCCCCTCCCCTCCCAAAAAAGAAGAGAAATCTCCCAGGAACACCAGATCCAGATGCCGAGGTCATCGCTCTGTCGCCCAAATCTCTCATGGCCACAAACCGATTCATATGTGAAATATGCAACAAAGGGTTTCAGAGAGACCAGAACCTGCAGCTTCACCGGAGGGGGCACAACCTGCCATGGAAGCTGCGACAAAGGTCGAACAAGGAGGTCAGGAAGAAGGTGTACATATGCCCAGAGAAGACATGCGTGCACCACGACCCGTCCAGAGCACTGGGGGACCTCACAGGGATAAAGAAGCATTATAGCAGAAAACACGGGGAGAAGAAATGGAAGTGCGACAAGTGCTCGAAGAAATACGCAGTCCAGTCCGATTGGAAAGCTCACACCAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGCACCCTTTTCTCTAGGAAGGATAGTTTCATCACCCATAGAGCTTTCTGCGATGCCTTGACAGAAGAGAGCGCGAGGCTCACCTCAGTTGGCACGTCAGATTTGAATTTTAAAAACGAAGAGTGTGTGATGAACTCTAACTCTCAGCTTAGCTCAGCTCATGGATTTGGCATTTCGCAATTCGGTGCAAATGGTTTTCGTTCAGAATTTGATGGAATGGGCATGAGTATGGGTGGTGCTGACCAGCAAATCATGAGGCCAAACTTGTCACTGTGGTTGAACCAGCTGGGAAATTCTGGTCTTTATGTGTCAAATTCGAGTTCTTCAGAGTCTCGAAGCAACCAATCAAAGCCAGCTTCTCCCATGTCAGCCACTGCACTTCTACAGAAAGCGGCTCAACTGGGTTCAACCAGAAGCAGCAACCCTTCCATATTTAGCGGCAGCTTTGGAGTAATGAGCTCGTCTTCTTCCCAGACAACGGCAAGTCTCGAAAACAACAACGCAGACCAAATCCAAAACCGTAACAACAACGAGCTGAACCAAGTGTATCATCATCAGAGTATGAAGCAATCAGAGAATTTTAGTTCAAGTAGCAGTGGTGTCGGCGGAACGTTGGGGATAAGCAATAACAACAACTTCAGCTCATTGACGCATTCATCGAGCAGTGGTCTTGATGAGCTTGTGTCACAGTCCCATGGAAGACAAAGTAACAACAAACAAGTGCAACTGAAGCTGTATCCTGATTCAAACAATGGAGAACATGGTTACACCAGAGATTTTCTTGGAATGAGCGGACCAGGAGGAGTAGGAGCTGGCTCTCCTTTCCTTCCCCAAGAGCTCGCTAAATTTGCTTCCATTGCCTCATCCATGGGAATGTCTCAGTTCCCGAGTAGTACTACTCAGTAA 1425 0.4786 MQMLSGDPFSLSSSIGAFAPDPNPNPNPKLNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEESARLTSVGTSDLNFKNEECVMNSNSQLSSAHGFGISQFGANGFRSEFDGMGMSMGGADQQIMRPNLSLWLNQLGNSGLYVSNSSSSESRSNQSKPASPMSATALLQKAAQLGSTRSSNPSIFSGSFGVMSSSSSQTTASLENNNADQIQNRNNNELNQVYHHQSMKQSENFSSSSSGVGGTLGISNNNNFSSLTHSSSSGLDELVSQSHGRQSNNKQVQLKLYPDSNNGEHGYTRDFLGMSGPGGVGAGSPFLPQELAKFASIASSMGMSQFPSSTTQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02193 474 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Accr2g02193 474 MobiDBLite consensus disorder prediction 1 20 - -
Accr2g02193 474 FunFam protein indeterminate-domain 12-like 45 113 - -
Accr2g02193 474 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Accr2g02193 474 SMART c2h2final6 66 88 IPR013087 -
Accr2g02193 474 SMART c2h2final6 107 137 IPR013087 -
Accr2g02193 474 SMART c2h2final6 142 162 IPR013087 -
Accr2g02193 474 MobiDBLite consensus disorder prediction 389 413 - -
Accr2g02193 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 451 IPR031140 -
Accr2g02193 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Accr2g02193 474 MobiDBLite consensus disorder prediction 21 41 - -
Accr2g02193 474 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Accr2g02193 474 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Accr2g02193 474 Gene3D Classic Zinc Finger 119 199 - -
Accr2g02193 474 MobiDBLite consensus disorder prediction 1 50 - -
Accr2g02193 474 MobiDBLite consensus disorder prediction 277 297 - -
Accr2g02193 474 Gene3D Classic Zinc Finger 45 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02193 Accr-Chr2 56850168 56851950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02193 1 459 IDZ Gene Family AT5G03150 48.440 9.11e-135 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g02193 zf-C2H2_jaz 6.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02193 K25870 - cpap:110815802 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02193 2 56850168 56851950 Accr5g02607 5 52333549 52335306 CCT
Accr2g02193 2 56850168 56851950 Accr2g02193 2 56850168 56851950 ECH