Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02127 ATGCTTCTCTCTCAACCACAACACAAGTCCTTCAAAGTCTCTCATGAGTTTGAATGCAAAACCTGCAACCGCAAGTTCTCGTCGTTTCAGGCGCTAGGAGGTCACAGAGCCAGCCACAAGAAACCCAAACTTGATTCTGAAGCAGAGCTACAAAAGCACAATTCTCAGAAATCGTTGCACGAGTGTTCTATTTGTGGCCAGAGATTCTCTCTGGGACAAGCTTTAGGCGGCCACATGAGAAAGCACAGAGCAGCGATGAATGAACAAGCCCTTGCTCCCACAAATGAGGTTGTTGTTTCTGATGTCTCTGTTCTCAAGCGATCTAACAGCAGCAAGAGGGTTATGTGCTTGGACTTGAATTTAACACCTCTCGAGAATGACTTGAAGTTGCTCTTCGGAAACAAGGCTCCTTCCATTAATCTTTCCTTGTGCTGA 435 0.4598 MLLSQPQHKSFKVSHEFECKTCNRKFSSFQALGGHRASHKKPKLDSEAELQKHNSQKSLHECSICGQRFSLGQALGGHMRKHRAAMNEQALAPTNEVVVSDVSVLKRSNSSKRVMCLDLNLTPLENDLKLLFGNKAPSINLSLC 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02127 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 17 44 IPR013087 -
Accr2g02127 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Accr2g02127 144 Pfam C2H2-type zinc finger 60 84 - -
Accr2g02127 144 Pfam C2H2-type zinc finger 17 42 - -
Accr2g02127 144 MobiDBLite consensus disorder prediction 33 52 - -
Accr2g02127 144 SUPERFAMILY beta-beta-alpha zinc fingers 17 82 IPR036236 -
Accr2g02127 144 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Accr2g02127 144 SMART c2h2final6 60 82 IPR013087 -
Accr2g02127 144 SMART c2h2final6 17 39 IPR013087 -
Accr2g02127 144 ProSitePatterns Zinc finger C2H2 type domain signature. 19 39 IPR013087 -
Accr2g02127 144 PANTHER ZINC FINGER PROTEIN ZAT5 14 127 - -
Accr2g02127 144 Gene3D Classic Zinc Finger 14 82 - -
Accr2g02127 144 MobiDBLite consensus disorder prediction 38 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02127 Accr-Chr2 56235549 56235983 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02127 17 143 C2H2 Transcription Factor Family AT3G53600 60.769 3.71e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g02127 zf-C2H2_6 6.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02127 - - pcin:129302030 187.578