LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g02053	ATGGCACCCAATCCAAGGGTGGTAGCAGCCTATCGCGCAATGACTGTTCTTGGCATCAAGGAAGTACAAGTTAAACCCGTATTGAAGCAACTGCTTAAACTCTATGATAAGAACTGGGAACTTATTGAACAAGAAAACTATAGAGTTCTAGCAGATGCTATATTTGAGCAGGCGGAAAAAGAGTTGCAGGGAAAGAGGCAAAAAAACCAGAACAATGATGAAGGAGAAATGGAGGATGAAGAAGCTCAAATGCAAGATGAATCAGTACGGCCTTTTAAGAGGTTGCGTTTAAGAGGCCAAGAGAATCAGCTGAGTATTGGTGGAACCAGCTCAGCTGCCTCCCCATCTAAAATGCCCAAAGTAGAAGATGATGAATTGCCCCAGCAGCCTCAATACAAGGCAATGTCGCCTCAGTCCAATAGAAATGCTGAGACTGAAGTTTGTCCCGTTCCAGTGCAAGACAGTCTAGTTGACAAGGGAAAGCAACCTTTATCATCTCAAGATGCGCCTGGAGGAAGAAGAGTTGGATCTGAAAGAGCATCTCCATCAGTGCAACTTAAAGAACCTACAACTGAACAGAGAATTGTGGTGTCACAGAAAAACCAGTTGCCCTATACTCACGAGTTGATCATACCTAAAGATGAGCCTATTGATGAACTGGTACATTATGATGCTCCTATGGCAACAAGAAATCCTGAACTGCCTAGGGGAAGAGACCCTCCAATGCAGCATGATGCAACTAGAAAACAAGGCAGGAATGGTCCTTTAATGTCAAAACGCAGAGATGTAGGTAGAGGGGAAGGTATTCGGGATTCATCAAATGAAGCGAACCATGAGGTTGCGACAAACCAAGAATGTTCTACCATAGAGATAGCCTCCTCAAAATCTAAATCTGGAGAGGAAGGATCTGAAATGACGACATCAAGTATAAATGTATTGAAGGAATCTAAGACATGTGATGCTCTAGTTATCAGAGGCAATACAGAAGATTTAGAAATGCATGCTGGCTTGTCAAATGGATCAATCAACGTTCAGTCTTCTTCTGCATTGGCTGCATCTCACATTTCCATTTCTCCCCCACTCACGACTGGTATGAATGATGCTGTACTAGTCACCAATAAGGCCAGAAGTGCTTTTCCAGAATGTGAAGATGGAAAGGGGCTGGAGGATCCTATGCATCCTCATTCAGGTAGTTTGGTGGTTGTTCAACAGCATCAGCTAACTCCTGATGATCTAAGGTCTCTCCATGGTGCTGATGACCTTTCAAAAGGAGAAGAAAATCTCAGAATTCCATGGGTGAATGAACTAACAAATGATTTCCCTCCACCTTTTCACTATCTGCACCAGAGCATTGCTTTCAGAGATGCTTATGTTAACTGGTGTCTTTCAAAGATCAAGTGTGAGGATTTTTGTTCGACTTGTTTGGGTGATTGTCTTCTGTCCCCCACTCCTTGTGTTTGTGCAAATAAAATTGAGGGTGGGTATGCATACACATCTGAAGGGCTACTGAAAGAAAGTTTATTGGAAGAGTGTATTACCATTAGCCACAACCCTCAACGACATCAGTTCTACTGTAAAATCTGCCCCCTTGAAAGAGCAAAGAATGATGATTGTTTAGAACCATGTAAAGGGCACTTGAAGAGAAAGTTTATCAAAGAATGTTGGGTAAAGTGTGGCTGTGTGAAACAGTGTGGCAATAGGGTTGTCCAACGAGGAATCACATTCAATTTGCAGGTATTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTAGAGGAGCTGCCAAAAGGTGCATTTGTGTGTGAGTTTGTGGGAGAAATATTAACCGTCAAGGAGTTGCATGAGAGGAACATTCAGTGTGCCCAAAATGGAACGTACACATACCCAGTTCTATTAGATGCAGATTGGGATTCAGGAGATATAAATGATAAAGAAGCTCTTTGCTTGGACGCAGCATCTTATGGGAATGTTGCTAGGTTTATAAATCACAGATGTTTGGATGCGAACTTGATTGAGATCCCAGTAGAAGTTGAAACCTCAGATCATCACTATTTTCATCTTGCTTTCTTCACATCCAGAAAAGTAGCTGCTTTGGAAGAGCTAACTTGGGATTATGGTATTGACTTTGACGACAGTGAGAGTCCTGTTAAGCCATTCTCTTGCAGATGTGGCAGCAAGTTCTGCAGGAAGATGGAGCGTTCAAATAGATCCAATAGATCTGCTCTTACCGCTTGA	2241	0.4248	MAPNPRVVAAYRAMTVLGIKEVQVKPVLKQLLKLYDKNWELIEQENYRVLADAIFEQAEKELQGKRQKNQNNDEGEMEDEEAQMQDESVRPFKRLRLRGQENQLSIGGTSSAASPSKMPKVEDDELPQQPQYKAMSPQSNRNAETEVCPVPVQDSLVDKGKQPLSSQDAPGGRRVGSERASPSVQLKEPTTEQRIVVSQKNQLPYTHELIIPKDEPIDELVHYDAPMATRNPELPRGRDPPMQHDATRKQGRNGPLMSKRRDVGRGEGIRDSSNEANHEVATNQECSTIEIASSKSKSGEEGSEMTTSSINVLKESKTCDALVIRGNTEDLEMHAGLSNGSINVQSSSALAASHISISPPLTTGMNDAVLVTNKARSAFPECEDGKGLEDPMHPHSGSLVVVQQHQLTPDDLRSLHGADDLSKGEENLRIPWVNELTNDFPPPFHYLHQSIAFRDAYVNWCLSKIKCEDFCSTCLGDCLLSPTPCVCANKIEGGYAYTSEGLLKESLLEECITISHNPQRHQFYCKICPLERAKNDDCLEPCKGHLKRKFIKECWVKCGCVKQCGNRVVQRGITFNLQVFFTSEGKGWGLRTLEELPKGAFVCEFVGEILTVKELHERNIQCAQNGTYTYPVLLDADWDSGDINDKEALCLDAASYGNVARFINHRCLDANLIEIPVEVETSDHHYFHLAFFTSRKVAALEELTWDYGIDFDDSESPVKPFSCRCGSKFCRKMERSNRSNRSALTA	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g02053	746	ProSiteProfiles	SET domain profile.	575	708	IPR001214	GO:0005515
	Accr2g02053	746	Pfam	SET domain	587	708	IPR001214	GO:0005515
	Accr2g02053	746	MobiDBLite	consensus disorder prediction	275	309	-	-
	Accr2g02053	746	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	742	-	-
	Accr2g02053	746	Gene3D	SET domain	421	733	IPR046341	-
	Accr2g02053	746	SUPERFAMILY	SET domain	427	732	IPR046341	-
	Accr2g02053	746	SMART	preset_2	418	559	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Accr2g02053	746	MobiDBLite	consensus disorder prediction	229	309	-	-
	Accr2g02053	746	Pfam	Ubiquitin-binding WIYLD domain	6	60	IPR018848	-
	Accr2g02053	746	MobiDBLite	consensus disorder prediction	154	193	-	-
	Accr2g02053	746	MobiDBLite	consensus disorder prediction	102	116	-	-
	Accr2g02053	746	CDD	SET_SETDB-like	442	708	-	-
	Accr2g02053	746	SMART	set_7	575	714	IPR001214	GO:0005515
	Accr2g02053	746	Gene3D	-	1	60	IPR043017	-
	Accr2g02053	746	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	744	IPR025776	-
	Accr2g02053	746	MobiDBLite	consensus disorder prediction	100	126	-	-
	Accr2g02053	746	Pfam	Pre-SET motif	422	567	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Accr2g02053	746	MobiDBLite	consensus disorder prediction	61	88	-	-
	Accr2g02053	746	MobiDBLite	consensus disorder prediction	255	274	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g02053	Accr-Chr2	55490883	55495543	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g02053	551	733	C2H2 Transcription Factor Family	AT2G23740	40.000	6.45e-29	122

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Accr2g02053		Pre-SET	7.5e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g02053	-		-	qsa:O6P43_006850	828.55