Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02045 ATGGAGGACTCTGGGAAGCATGGCAACAACACCAGTAAAATTTTGAACCCATGGATGCTTCAGTTCCAGAAAATGGGTCTTGAACTCAAGTGCCCTCTCTGTTTAAACTTGTTCAAAATGCCTATGTTACTTCCATGCAACCACATATTCTGCAGCCCCTGCATACCTGATTGCTCAAGGCCCAGTTCAGAATGTGCTGTCTGTAATATTCATTATGCTCAAAGAGATCTGAGGTCTCTGCCTATTGTGGAAAACATGGTTGCAATTTATAAAGGCCTGGATGCTTCCTTTTATGCCAATCTATCTCAGAATCGTTCTCATGTTTTGGTGCAGGGCGAAACCATGTTAAATGCAGCTTTTAATTATAAAATGTCCAAGGACCCATCCAAAACATCTCTAGGAGATAATCTGCATAGGGAGCAGTTAGTCCATTCACCAACAATGGCTGAGTGTGTCATGGATCCCTTGAGATTAGACCATTCTATGGATGTGGATATTGGCAAGAATCACAAATATGAGAAGAGTGGTAATGTTGGTCATGGTAAAGATACGTTGTTTGAGGTTTCTTGCAAGGAAGAGATTTTGATGAAATGTTCTCAACTGGATGGAAGGACCCATGAAGATTGTGGGCTTGTGGAAATGAACATTAATCAAGTTACTCAATCTTCACTAGGCAGCCCTCCATTTTGTGATACAAAAGGCTCAGACAATGACTGCAGTGACCGTGACAGTGAACATCACATGCCTGCTGAGAGATTAGAAAGTTCTTCATCAAAGAGAGCGAGCAAAGAAAATGAAATATTGGAAAAAAGGATCCAGTTAAGGTCTGAAAGCTCTGCCTCTGAAACAGAGGGTCTTATGAGAGACTCCAAGAGGCCAAAAAACCTTTCACATGACAATGATGGCATTCAACCTATTGTAACCCATCAAAGTAAGACGATGACTTCTGAATGTAACTCAGAACTGAAATCTAGGATTGACCTGGATTCATGTTCAGATTCTAGCGTGTGCTCTTTTTGCCAGTCTTCTAGAACCTCAGAGGTTACTGGGCCAATGTTGCATTATAAAAATGGAGATTTGCTGACGGGAGTTGCTGCACTCCAACCAAATGTCATACATGTGCATAAACTTTGCATTGATTGGTCACCTCAAGTGTATTTTGTTGATGAAACTGTTAAAAATTTGAAGGCAGAAGTAGCAAGGGGAGCAAAGCTAAAATGCAGCAAATGTGGCCAAAAGGGGGCTGCCCTTGGCTGCTATGTTAGATCCTGTAGGCGAACTTATCATGTTCCTTGTGCAATGGAAATCTCAGCTTGCCGTTGGGATGATGAGGAATATCTAATGCTCTGTCCGTCTCATTCTCATGTCAAATTTCCACATGAGAAATCCAGATCTAAGAAACAGGGCTCCCAGAAGCTTCCTGTGTTATCTCATTTGGCACCTAAGCCGTCAAACCCCTTGATAGTTTTGTCAGATGATAGTAAACATTTGGTTTTCTGTGGATCTGCTCTGTCAACAGATGAAAAGATACACTTGATCAATTTTGCCAGTAGAATTGGTGCTACTGTTACCAAGTTTTGGACGCCAGATGTGACACATGTGGTTGCAGCAACTGATTCAAACGGAGCATGTGCCAGGACACTTAAAGTCCTTATGGGCATTTTGAATGGGCAGTGGGTTCTTAAAATGGACTGGGTAACTGCAAGCATGGAGGTGATGCGTCCTGTGGAAGAAGAGCCATTTGAAATAAGTCTTGATAACTATGGCTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGCGCCCAAGCTATTTAGCGGCTTTAGCATGTACTTTTCTGGTGACTACACGTCAGATTATCAGGAGGATCTTGTAGACTTGGTTGTGGCAGGAGGAGGTACTGTTTTGGAAAGCAAGGAAGAATTGCAAATAAAAGGTCATGAATGCAAGGAGGGCTCAAAGCTGATTGTTTACAATCTTGATCCCCCACAAGGAAGCAGGTTGGGGGATGAAGTTACAATTCTTTGGGAGAGGCTAAACGAGGCAGAGGATTTAGCTGCTACTTCTGGCTCGCAAGTCGTTGGTCACACGTGGATTTTGGAGTCAATTGCTGCATGCAAGTTACAGCCCTTTGTTAGTTAG 2154 0.429 MEDSGKHGNNTSKILNPWMLQFQKMGLELKCPLCLNLFKMPMLLPCNHIFCSPCIPDCSRPSSECAVCNIHYAQRDLRSLPIVENMVAIYKGLDASFYANLSQNRSHVLVQGETMLNAAFNYKMSKDPSKTSLGDNLHREQLVHSPTMAECVMDPLRLDHSMDVDIGKNHKYEKSGNVGHGKDTLFEVSCKEEILMKCSQLDGRTHEDCGLVEMNINQVTQSSLGSPPFCDTKGSDNDCSDRDSEHHMPAERLESSSSKRASKENEILEKRIQLRSESSASETEGLMRDSKRPKNLSHDNDGIQPIVTHQSKTMTSECNSELKSRIDLDSCSDSSVCSFCQSSRTSEVTGPMLHYKNGDLLTGVAALQPNVIHVHKLCIDWSPQVYFVDETVKNLKAEVARGAKLKCSKCGQKGAALGCYVRSCRRTYHVPCAMEISACRWDDEEYLMLCPSHSHVKFPHEKSRSKKQGSQKLPVLSHLAPKPSNPLIVLSDDSKHLVFCGSALSTDEKIHLINFASRIGATVTKFWTPDVTHVVAATDSNGACARTLKVLMGILNGQWVLKMDWVTASMEVMRPVEEEPFEISLDNYGCQGGPKAGRLRALANAPKLFSGFSMYFSGDYTSDYQEDLVDLVVAGGGTVLESKEELQIKGHECKEGSKLIVYNLDPPQGSRLGDEVTILWERLNEAEDLAATSGSQVVGHTWILESIAACKLQPFVS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02045 717 SMART ring_2 31 68 IPR001841 -
Accr2g02045 717 SMART ring_2 407 453 IPR001841 -
Accr2g02045 717 Pfam BRCA1 C Terminus (BRCT) domain 498 569 IPR001357 -
Accr2g02045 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 100 IPR013083 -
Accr2g02045 717 Gene3D BRCT domain 605 710 IPR036420 -
Accr2g02045 717 ProSiteProfiles BRCT domain profile. 604 717 IPR001357 -
Accr2g02045 717 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Accr2g02045 717 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 278 IPR031099 GO:0006281|GO:0006974
Accr2g02045 717 MobiDBLite consensus disorder prediction 220 312 - -
Accr2g02045 717 ProSiteProfiles Extended PHD (ePHD) domain profile. 334 454 IPR034732 -
Accr2g02045 717 ProSiteProfiles BRCT domain profile. 497 583 IPR001357 -
Accr2g02045 717 SMART PHD_3 406 454 IPR001965 -
Accr2g02045 717 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Accr2g02045 717 SUPERFAMILY RING/U-box 22 88 - -
Accr2g02045 717 CDD BRCT_Bard1_rpt1 497 571 - -
Accr2g02045 717 Gene3D BRCT domain 494 599 IPR036420 -
Accr2g02045 717 MobiDBLite consensus disorder prediction 235 298 - -
Accr2g02045 717 Pfam PHD-like zinc-binding domain 375 454 - -
Accr2g02045 717 SUPERFAMILY BRCT domain 608 714 IPR036420 -
Accr2g02045 717 Pfam RING-type zinc-finger 31 56 IPR027370 -
Accr2g02045 717 SMART BRCT_7 487 573 IPR001357 -
Accr2g02045 717 SMART BRCT_7 606 710 IPR001357 -
Accr2g02045 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 456 IPR013083 -
Accr2g02045 717 SUPERFAMILY BRCT domain 497 584 IPR036420 -
Accr2g02045 717 FunFam Breast cancer type 1 susceptibility protein homolog 494 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02045 Accr-Chr2 55419107 55424114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02045 527 640 Core DNA Replication Machinery Family AT4G02110 30.252 2.05e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02045 K10683 - gmx:100784883 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02045 2 55419107 55424114 Accr2g02045 2 55419107 55424114 ECH