Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01973 ATGGCTTGTTCTGGAAGTAATACTAGTGGAGGGTCGTCTGGCGGGTCTCCTTGCGGGGCATGCAAGTTCCTGAGAAGGAAGTGTGCTTCTGATTGTATATTTGCTCCTTATTTCTGCTCTGAACAAGGCCCTTCTAGTTTTGCTGCCATACATAAGGTTTTTGGAGCTAGTAATGTTTCTAAGCTGCTCTTGAACTTGCCTCCTCATGATCGTTGTGAGGCTGTCCTCACTATTGCCTATGAAGCTCAGGCTCGTATCAGAGACCCTGTTTATGGCTGTGTCTCCCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAAGCACAGTTGATGCAAGCCAAGGCACAGTTAGCTCAGAAGAGCATAGAGAATAATGACGATTACTGGGGAAGGAATATTAATAATGCTTATGGGCAAACAGTATTGAATCCAATCTATGGCACTAATAATTACACCAACATGAACCCCATTTCTCCTCAGAGTTCTCTTGACTCTATGGATTACTCTACCATCCATGATGGCTCATCTTCCACGAGTTTGCAACAGGAGGGTTTCTCTTTCTACCAGCAACCTCGCTCCAAGAAAAGTCCATCTTATGATAGCAATGACTTGAGCGAGCTTCAAGAGCTAGCTCTCAGAATGATGAGAAATTAG 657 0.4444 MACSGSNTSGGSSGGSPCGACKFLRRKCASDCIFAPYFCSEQGPSSFAAIHKVFGASNVSKLLLNLPPHDRCEAVLTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQAKAQLAQKSIENNDDYWGRNINNAYGQTVLNPIYGTNNYTNMNPISPQSSLDSMDYSTIHDGSSSTSLQQEGFSFYQQPRSKKSPSYDSNDLSELQELALRMMRN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01973 218 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Accr2g01973 218 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Accr2g01973 218 Coils Coil 97 124 - -
Accr2g01973 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01973 Accr-Chr2 54283779 54284967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01973 1 218 AS2 family AT2G42430 55.020 2.51e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Accr2g01973 LOB 4.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01973 K13944 - gmx:100816433 251.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g01973 2 54283779 54284967 Accr5g02478 5 51126201 51126885 CCT
Accr2g01973 2 54283779 54284967 Accr2g01973 2 54283779 54284967 ECH