Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01958 ATGGCGAATCAGGTAGTCAAAGTGAAGAGGGAAACGATTGCAGCATGCATGACCTGCCCACTCTGCAACAAGTTGTTCAAGGAGGCCACCACTATATCTGAATGCCTTCATACGTTTTGCAGGAAATGCATCTATGACAAAATTAATGATGAGGAACTGGAATGCTGCCCAATATGCAACATTGATTTGGGATGTGTTCCTCTCGAGAAATTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCTAAAATTTTCCCTTTGAAGAAAACAAAGGCAAAGGAACCAGAAGTTGTCCCGTCAGAACCATTACCAGCTAGAAGAAAGGAAAGATCACTTTCGTCTTTGGTTGTCAGCACTCCCAGAGTGCCAACACAGTCCACCATGACAGGCAGAAGGACAAAGCCTACAAGAAAGGCTAGCACTCAACGCTCCACTAGTTTTCCCATTGAGAAACCCATTATAAAAGAAGAAGATTCAGTGGGAGATCATCCAGAGAGTTCAAGCTCCCCTGATACCTCCAACAAGGTTGCTCAGACTACTAGACAGAACTCGTTCCCTCATGATGCTAGCCAACCTGTTTCCAATAAGGAGAAAAGTAATGGGGCTGAACCTTGGGAAGCAAAATTGGACCTTTGGAAACCTTTGAATTGTTTGGTGGAGATTGCGAGTAGGAGTAAATCTTTCAAGTCCAACATGCAAGGATGTGACCCTAAACAAGAACCTAGTCAAATAAATGAGAGTGATTCTCAAGTACAAAAGTCCAAAATTAAGGACAACAGACGAAAGCCAAAGGTTGAGGATGAAAAGATCGGCACAGATCCTGCTTCTACTGATACAGCAAAAACCAATAAATTGCGCAGAAATCGCCGAAAAAAGGAACCTGTTTTGGGTGAATCAAGCGTATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAAATGAAAGAAAGAACTGGTCAAATATGGTTCTCCTTAGTAGCTTCTGAAGACCAGGACCGAGATGCGTCACTACCCCAAGTTTCTGCTAAATACTTAAGAATAAAGGATGGAAACATGCCAGTCTCATATATCCAGAAGTACCTGATGAAGAAATTAGATCTGACAAGTGAAGATGAGGTTGAGATTAAATGTATGGGACAACCAGTGGTCCCTACATTGCAGCTAAATAACTTGATCGACTTGTGGCTGCAGACAACATCAACATCACAGAGAATCCCAGCAGCTATTGGATCATCAGCTAAAGATTTTGTTATGGTCCTGACCTATGCTCGGAAGGCAGCAGCCCCGCCTCCTTGA 1296 0.4344 MANQVVKVKRETIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDKINDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKIFPLKKTKAKEPEVVPSEPLPARRKERSLSSLVVSTPRVPTQSTMTGRRTKPTRKASTQRSTSFPIEKPIIKEEDSVGDHPESSSSPDTSNKVAQTTRQNSFPHDASQPVSNKEKSNGAEPWEAKLDLWKPLNCLVEIASRSKSFKSNMQGCDPKQEPSQINESDSQVQKSKIKDNRRKPKVEDEKIGTDPASTDTAKTNKLRRNRRKKEPVLGESSVSPQAVLDANSAKMKERTGQIWFSLVASEDQDRDASLPQVSAKYLRIKDGNMPVSYIQKYLMKKLDLTSEDEVEIKCMGQPVVPTLQLNNLIDLWLQTTSTSQRIPAAIGSSAKDFVMVLTYARKAAAPPP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01958 431 MobiDBLite consensus disorder prediction 150 164 - -
Accr2g01958 431 MobiDBLite consensus disorder prediction 165 198 - -
Accr2g01958 431 MobiDBLite consensus disorder prediction 229 301 - -
Accr2g01958 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Accr2g01958 431 Gene3D - 302 404 - -
Accr2g01958 431 MobiDBLite consensus disorder prediction 91 202 - -
Accr2g01958 431 SUPERFAMILY RING/U-box 14 84 - -
Accr2g01958 431 MobiDBLite consensus disorder prediction 229 250 - -
Accr2g01958 431 MobiDBLite consensus disorder prediction 91 108 - -
Accr2g01958 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Accr2g01958 431 MobiDBLite consensus disorder prediction 251 274 - -
Accr2g01958 431 SMART ring_2 19 59 IPR001841 -
Accr2g01958 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 427 IPR044807 GO:0004842
Accr2g01958 431 CDD RING-HC_PCGF 17 60 - -
Accr2g01958 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Accr2g01958 431 MobiDBLite consensus disorder prediction 112 148 - -
Accr2g01958 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01958 Accr-Chr2 54019315 54024538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01958 2 348 C3H Transcription Factor Family AT2G30580 51.724 4.46e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01958 K16277 - gmx:100793731 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g01958 2 54019315 54024538 Accr5g02496 5 51296542 51301950 CCT
Accr2g01958 2 54019315 54024538 Accr2g01958 2 54019315 54024538 ECH