Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01932 ATGTTTCCTGCGGCTATGTCGTCCAATTCTACTGCTTTGTCCGTAGAATCCTCTGTCTCTTCTGCTTCTAGACTTCATGACCTCTCTGGACTAAATCTCACAATTCCTCCTCAGCTGCCTCCAAAGATCAAGAAAAAGAGAAGCCTCCCAGGAAACCCAGACCCAGATGCAGAAGTGATAGCGTTATCTCCGAAGACACTTTTGGCGACCAACAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAATCTTCAACTTCATAGGAGAGGTCATAATCTGCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTTAAAAAGAGAGCCTACGTTTGTCCCGAGCCTACATGTGTTCATCACAATCCCTCGAGGGCTCTTGGGGACCTTACTGGAATTAAGAAACATTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAGAAGTGCTCAAAGATCTATGCAGTTCAGTCAGATTGGAAAGCTCATACTAAAACCTGTGGAACTAGAGAATATAGATGTGACTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTCTCAGCAAATCAGCTAGCCTCAGCCACCACCAACCCACTGGTCCAATCTCTCTTGCTATATCCAAACCAACATAGCTTCCTTAATAATCCATGGAACCCACCAATAACTCAAGAAAACCCTAACCCTAGCAACCTTCTCCAAATGAAACCCGAAGCTCAACATTTTCAGATGCCTCATTCGTTTGTTCAGGAAACTCCTCATCTTCATCCACACCACAAGAGCGCTCTGATAAGCACACCCTTTCGGCCACACATGGCCACACAATCTTCCTCAAACGCTGCCACCTCAGCCCACCTTTCTGCCACTGCTCTCCTTCAAAAGGCTGCCACCGTCGGGGTCACTCCGATCACGCCCCAGCCATCTCATCAGTCTCAGACTCATCACCTGACTCACCTTAGCATGAGCGAGTTTGGTTCGGTGAACCAGCTCGACTCGGTGGTGCCTGACTATGTGAGAGGTTTCGCAACTCGGAATCTTAAGAATGAGGATTTGACAAGGGACTTTTTGGGTTTAACCTACGAGGCCAACAACGGAGGCGACGGTGAGAACGGCGGTGGAGCGGTCAACCTGAAGAATGTCATGACGACGTTCACGGGGGACGTGTACGAGCACCACCATCACCCCTCGCTCTTCAAGTCCCGACAAGGTTTCGGATTCGTTGGGACTTCCAATGCCCCCGAGACGTGGAGCAATTATTAA 1320 0.4833 MFPAAMSSNSTALSVESSVSSASRLHDLSGLNLTIPPQLPPKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPTCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHTKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLASATTNPLVQSLLLYPNQHSFLNNPWNPPITQENPNPSNLLQMKPEAQHFQMPHSFVQETPHLHPHHKSALISTPFRPHMATQSSSNAATSAHLSATALLQKAATVGVTPITPQPSHQSQTHHLTHLSMSEFGSVNQLDSVVPDYVRGFATRNLKNEDLTRDFLGLTYEANNGGDGENGGGAVNLKNVMTTFTGDVYEHHHHPSLFKSRQGFGFVGTSNAPETWSNY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01932 439 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Accr2g01932 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Accr2g01932 439 FunFam protein indeterminate-domain 12-like 52 120 - -
Accr2g01932 439 MobiDBLite consensus disorder prediction 31 56 - -
Accr2g01932 439 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Accr2g01932 439 Gene3D Classic Zinc Finger 53 121 - -
Accr2g01932 439 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 386 IPR031140 -
Accr2g01932 439 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Accr2g01932 439 Gene3D Classic Zinc Finger 142 207 - -
Accr2g01932 439 SMART c2h2final6 73 95 IPR013087 -
Accr2g01932 439 SMART c2h2final6 149 169 IPR013087 -
Accr2g01932 439 SMART c2h2final6 114 144 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01932 Accr-Chr2 53693799 53697175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01932 11 428 IDZ Gene Family AT4G02670 49.203 1.59e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr2g01932 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01932 K25870 - gmx:100780056 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g01932 2 53693799 53697175 Accr5g02872 5 54283789 54286702 CCT