Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01889 ATGGATCAGCCCCCATCCTCTGCTGTTAGACGCAGCTTGAAGCGCAAGCTCGAACAAGAATTCGAGGAAGATAGAGCAGACCAACAAAAGGCTGATCGTAAAGGGTTGGTTTTCGAACCTCAAAAGCCTCATCAGGATCTCTTGAGTGACGTTGTGTCGCAAGTCACTATTCTCAACTCTAGTTTCTCATCGTCTCAGTCGGATCGCCTCGCTGCCAAGCGTGCGGTTCATGTTCTCTGTGAACTCGCAAAGAATGAGGAACTTGTAAGTGGTATAGTGGGCTGTGGAGCTGTTCCTGCTTTGTTAAGACATCTGAAAGCACCAGAAACAGTTAGAGAAGGCGACGGTGGTCCCAAGCCTTACGAGCATGAGGTGGAAAAGGGATGTGCCTTTGTCCTTGGGCTTCTTGCTGTTAAACCAGAGCATCAACAACTCATTGTTGATGCTGGAGCTCTGCCCTGTCTCATGGATTTGTTAGAGAGGCACAAGACCCGGGTCAGTTCACGGGCACTTACTGGTCTTATAAGGAGAGCAGCTGATGCCATCTCAAACCTTGCGCACGAAAACAACACCATTAAAGCCCGTGTTGGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTCAAATATAATGATGCAAAGGTACAAAAGGCATCTGCAGGGGCCTTACGAACTCTTGCATTTCAAAATGATGACAACAAATCTCAGATTGTTGGATGCAATGCACTGCCTACTCTTATACTAATGCTAGGATCAGAGGATGCTACAATACATTCTGAAGCAGTTGGCGTGATTGGAAATCTGGTTCACTCTTCTCCAAACATGAAGAGGGAAGTTCTTCAAGCTGGTGCTCTACAACCTGTAATTGGATTACTTAGATCTTGCTGTTCGGAGAGCCAAAGAGAAGCAGCTCTTTTAATCGGTCAATTTGCTGCAACGGATGCTGATTGCAAGGTTCACATTGCTCAAAGAGGGGCTATCCAGCCATTGATTGACATGCTCAGGACTCCTGATGCACAGCTTCGGGAAATGTCAGCTTTTGCACTTGGGAGACTGGCTCAGGACACACATAATCAAGCTGGTATTGCCTATCATGGAGGTATAGAGCCTCTACTCAACCTTCTTTGCTCTAAGAATGGACCTCTCCAACATAATGCAGCCTTTGCTCTATATGGTCTTGTTGATAATGAGGACAACGTTGCGGATATCGTTAAGCTTGGTGGTGTTCAAAAACTACAGGATGTAGATTTCAAAATTCAACCTTCCAGGGAGTGTGTAGAAAAAACAATGAAAAGGTTAGAGGAGAAAATGCATGGACGACAGGTGCTGGAACAACTTTTGTACCTTATGCGTTTTGGAGAAGAGGCTGTTCAAAGACGTGTAGCTCTGGCTCTTGCTCATTTTTGTGCCCCTGATGATCGGAAATTTATTTTTGTTGACAACAATGGAATTGAGTTCCTGCTGGATCTTCTAGAATCGACAAATACCAAACTGAAACGCGATGCTTCAATGGCACTTCACTCGCTGGCTGTCAAAACCACATCTGCCTCTTCCTTCGATGCTGCTCCTCCACCCCCAACTCCTCAGGTATACTTAGGCGAGCAATACGTAAACAATCCTACACTTTCTGATGTCACGTTTTTAGTTGAAGGCAAACGATTCTATGCGCACCGAATATGTTTACTTGCTTCCTCTGATGCGTTTTGTGCAATGTTTGATGGTGGTTACCGGGAAAGGGAAGCCAAAGATATAGAGATTCCTAACATTAAATGGGATGTCTTTGAGTTGATGATGAGATTTATTTACACAGGAACCGTATGTATCAATTTGGATGTTGCTCAGGACCTCTTAAGAGCTGCTGATCAGTATCTTTTAGATAGTCTTAAACGACACTGTGAATATGCAATTGCTCAGGATATTTCCGTGGAAAATGTTTCTCTTATGTACGAGTTATCTGAGACATTCAATGCAATGTCATTGAGGCAATCATGTATACTATTTTTATTGGAGCAATTTGACAAACTGAACGTCAAACCATGGTATTGCCGCATGATGCGTCGCATCATCCCAGCTATACATGAATTTTTCGGAAGCTTACTTACAAAGATTGCACAAGCAAAATCGTAA 2130 0.4404 MDQPPSSAVRRSLKRKLEQEFEEDRADQQKADRKGLVFEPQKPHQDLLSDVVSQVTILNSSFSSSQSDRLAAKRAVHVLCELAKNEELVSGIVGCGAVPALLRHLKAPETVREGDGGPKPYEHEVEKGCAFVLGLLAVKPEHQQLIVDAGALPCLMDLLERHKTRVSSRALTGLIRRAADAISNLAHENNTIKARVGMEGGIPPLVELLKYNDAKVQKASAGALRTLAFQNDDNKSQIVGCNALPTLILMLGSEDATIHSEAVGVIGNLVHSSPNMKREVLQAGALQPVIGLLRSCCSESQREAALLIGQFAATDADCKVHIAQRGAIQPLIDMLRTPDAQLREMSAFALGRLAQDTHNQAGIAYHGGIEPLLNLLCSKNGPLQHNAAFALYGLVDNEDNVADIVKLGGVQKLQDVDFKIQPSRECVEKTMKRLEEKMHGRQVLEQLLYLMRFGEEAVQRRVALALAHFCAPDDRKFIFVDNNGIEFLLDLLESTNTKLKRDASMALHSLAVKTTSASSFDAAPPPPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFCAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGTVCINLDVAQDLLRAADQYLLDSLKRHCEYAIAQDISVENVSLMYELSETFNAMSLRQSCILFLLEQFDKLNVKPWYCRMMRRIIPAIHEFFGSLLTKIAQAKS 709
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01889 709 SMART BTB_4 544 641 IPR000210 GO:0005515
Accr2g01889 709 Gene3D - 45 174 IPR011989 -
Accr2g01889 709 Pfam BTB/POZ domain 537 639 IPR000210 GO:0005515
Accr2g01889 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Accr2g01889 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Accr2g01889 709 ProSiteProfiles BTB domain profile. 544 611 IPR000210 GO:0005515
Accr2g01889 709 SMART arm_5 139 187 IPR000225 GO:0005515
Accr2g01889 709 SMART arm_5 189 229 IPR000225 GO:0005515
Accr2g01889 709 SMART arm_5 356 396 IPR000225 GO:0005515
Accr2g01889 709 SMART arm_5 273 313 IPR000225 GO:0005515
Accr2g01889 709 SMART arm_5 472 512 IPR000225 GO:0005515
Accr2g01889 709 SMART arm_5 85 138 IPR000225 GO:0005515
Accr2g01889 709 SMART arm_5 315 355 IPR000225 GO:0005515
Accr2g01889 709 SMART arm_5 231 271 IPR000225 GO:0005515
Accr2g01889 709 SUPERFAMILY ARM repeat 175 512 IPR016024 -
Accr2g01889 709 MobiDBLite consensus disorder prediction 1 34 - -
Accr2g01889 709 Gene3D Potassium Channel Kv1.1; Chain A 521 670 IPR011333 -
Accr2g01889 709 SUPERFAMILY POZ domain 535 638 IPR011333 -
Accr2g01889 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 235 IPR000225 GO:0005515
Accr2g01889 709 MobiDBLite consensus disorder prediction 9 34 - -
Accr2g01889 709 Pfam Armadillo/beta-catenin-like repeat 231 270 IPR000225 GO:0005515
Accr2g01889 709 Pfam Armadillo/beta-catenin-like repeat 196 228 IPR000225 GO:0005515
Accr2g01889 709 SUPERFAMILY ARM repeat 64 166 IPR016024 -
Accr2g01889 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
Accr2g01889 709 Gene3D - 298 519 IPR011989 -
Accr2g01889 709 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 705 IPR044282 -
Accr2g01889 709 Coils Coil 14 34 - -
Accr2g01889 709 Gene3D - 175 297 IPR011989 -
Accr2g01889 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 150 200 IPR000225 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Accr2g01889 Accr-Chr2 53025118 53031334 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01889 293 514 U-box Gene Family AT2G23140 25.328 2.15e-10 62.0
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr2g01889 BTB 1.6e-26 CL0033
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01889 - - sind:105165291 1005.36