Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01888 ATGGATCAGCCCCCATCCTCTGCTGTTAGACGCAGCTTGAAGCGCAAGCTCGAACAAGAATTCGAGGAAGATAGAGCAGACCAACAAAAGGCTGATCGTAAAGGGTTGGTTTTCGAACCTCAAAAGCCTCATCAGGATCTCTTGAGTGACGTTGTGTCGCAAGTCACTATTCTCAACTCTAGTTTCTCATCGTCTCAGTCGGATCGCCTCGCTGCCAAGCGTGCGGTTCATGTTCTCTGTGAACTCGCAAAGAATGAGGAACTTGTAAGTGGTATAGTGGGCTGTGGAGCTGTTCCTGCTTTGTTAAGACATCTGAAAGCACCAGAAACAGTTAGAGAAGGCGACGGTGGTCCCAAGCCTTACGAGCATGAGGTGGAAAAGGGATGTGCCTTTGTCCTTGGGCTTCTTGCTGTTAAACCAGAGCATCAACAACTCATTGTTGATGCTGGAGCTCTGCCCTGTCTCATGGATTTGTTAGAGAGGCACAAGACCCGGGTCAGTTCACGGGCACTTACTGGTCTTATAAGGAGAGCAGCTGATGCCATCTCAAACCTTGCGCACGAAAACAACACCATTAAAGCCCGTGTTGGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTCAAATATAATGATGCAAAGGTACAAAAGGCATCTGCAGGGGCCTTACGAACTCTTGCATTTCAAAATGATGACAACAAATCTCAGATTGTTGGATGCAATGCACTGCCTACTCTTATACTAATGCTAGGATCAGAGGATGCTACAATACATTCTGAAGCAGTTGGCGTGATTGGAAATCTGGTTCACTCTTCTCCAAACATGAAGAGGGAAGTTCTTCAAGCTGGTGCTCTACAACCTGTAATTGGATTACTTAGATCTTGCTGTTCGGAGAGCCAAAGAGAAGCAGCTCTTTTAATCGGTCAATTTGCTGCAACGGATGCTGATTGCAAGGTTCACATTGCTCAAAGAGGGGCTATCCAGCCATTGATTGACATGCTCAGGACTCCTGATGCACAGCTTCGGGAAATGTCAGCTTTTGCACTTGGGAGACTGGCTCAGGACACACATAATCAAGCTGGTATTGCCTATCATGGAGGTATAGAGCCTCTACTCAACCTTCTTTGCTCTAAGAATGGACCTCTCCAACATAATGCAGCCTTTGCTCTATATGGTCTTGTTGATAATGAGGACAACGTTGCGGATATCGTTAAGCTTGGTGGTGTTCAAAAACTACAGGATGTAGATTTCAAAATTCAACCTTCCAGGGAGTGTGTAGAAAAAACAATGAAAAGGTTAGAGGAGAAAATGCATGGACGAGTGCTGGAACAACTTTTGTACCTTATGCGTTTTGGAGAAGAGGCTGTTCAAAGACGTGTAGCTCTGGCTCTTGCTCATTTTTGTGCCCCTGATGATCGGAAATTTATTTTTGTTGACAACAATGGAATTGAGTTCCTGCTGGATCTTCTAGAATCGACAAATACCAAACTGAAACGCGATGCTTCAATGGCACTTCACTCGCTGGCTGTCAAAACCACATCTGCCTCTTCCTTCGATGCTGCTCCTCCACCCCCAACTCCTCAGGTATACTTAGGCGAGCAATACGTAAACAATCCTACACTTTCTGATGTCACGTTTTTAGTTGAAGGCAAACGATTCTATGCGCACCGAATATGTTTACTTGCTTCCTCTGATGCGTTTTGTGCAATGTTTGATGGTGGTTACCGGGAAAGGGAAGCCAAAGATATAGAGATTCCTAACATTAAATGGGATGTCTTTGAGTTGATGATGAGATTTATTTACACAGGAACCGTATGTATCAATTTGGATGTTGCTCAGGACCTCTTAAGAGCTGCTGATCAGTATCTTTTAGATAGTCTTAAACGACACTGTGAATATGCAATTGCTCAGGATATTTCCGTGGAAAATGTTTCTCTTATGTACGAGTTATCTGAGACATTCAATGCAATGTCATTGAGGCAATCATGTATACTATTTTTATTGGAGCAATTTGACAAACTGAACGTCAAACCATGGTATTGCCGCATGATGCGTCGCATCATCCCAGCTATACATGAATTTTTCGGAAGCTTACTTACAAAGATTGCACAAGCAAAATCGTAA 2127 0.4401 MDQPPSSAVRRSLKRKLEQEFEEDRADQQKADRKGLVFEPQKPHQDLLSDVVSQVTILNSSFSSSQSDRLAAKRAVHVLCELAKNEELVSGIVGCGAVPALLRHLKAPETVREGDGGPKPYEHEVEKGCAFVLGLLAVKPEHQQLIVDAGALPCLMDLLERHKTRVSSRALTGLIRRAADAISNLAHENNTIKARVGMEGGIPPLVELLKYNDAKVQKASAGALRTLAFQNDDNKSQIVGCNALPTLILMLGSEDATIHSEAVGVIGNLVHSSPNMKREVLQAGALQPVIGLLRSCCSESQREAALLIGQFAATDADCKVHIAQRGAIQPLIDMLRTPDAQLREMSAFALGRLAQDTHNQAGIAYHGGIEPLLNLLCSKNGPLQHNAAFALYGLVDNEDNVADIVKLGGVQKLQDVDFKIQPSRECVEKTMKRLEEKMHGRVLEQLLYLMRFGEEAVQRRVALALAHFCAPDDRKFIFVDNNGIEFLLDLLESTNTKLKRDASMALHSLAVKTTSASSFDAAPPPPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFCAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGTVCINLDVAQDLLRAADQYLLDSLKRHCEYAIAQDISVENVSLMYELSETFNAMSLRQSCILFLLEQFDKLNVKPWYCRMMRRIIPAIHEFFGSLLTKIAQAKS 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01888 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 326 368 IPR000225 GO:0005515
Accr2g01888 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 284 IPR000225 GO:0005515
Accr2g01888 708 SMART BTB_4 543 640 IPR000210 GO:0005515
Accr2g01888 708 Gene3D - 277 418 IPR011989 -
Accr2g01888 708 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 704 IPR044282 -
Accr2g01888 708 SMART arm_5 139 187 IPR000225 GO:0005515
Accr2g01888 708 SMART arm_5 189 229 IPR000225 GO:0005515
Accr2g01888 708 SMART arm_5 471 511 IPR000225 GO:0005515
Accr2g01888 708 SMART arm_5 356 396 IPR000225 GO:0005515
Accr2g01888 708 SMART arm_5 273 313 IPR000225 GO:0005515
Accr2g01888 708 SMART arm_5 315 355 IPR000225 GO:0005515
Accr2g01888 708 SMART arm_5 85 138 IPR000225 GO:0005515
Accr2g01888 708 SMART arm_5 231 271 IPR000225 GO:0005515
Accr2g01888 708 SUPERFAMILY ARM repeat 64 166 IPR016024 -
Accr2g01888 708 Gene3D - 51 172 IPR011989 -
Accr2g01888 708 MobiDBLite consensus disorder prediction 1 34 - -
Accr2g01888 708 Gene3D - 423 518 IPR011989 -
Accr2g01888 708 ProSiteProfiles BTB domain profile. 543 610 IPR000210 GO:0005515
Accr2g01888 708 Pfam Armadillo/beta-catenin-like repeat 231 270 IPR000225 GO:0005515
Accr2g01888 708 Pfam Armadillo/beta-catenin-like repeat 196 228 IPR000225 GO:0005515
Accr2g01888 708 Gene3D Potassium Channel Kv1.1; Chain A 520 669 IPR011333 -
Accr2g01888 708 SUPERFAMILY ARM repeat 175 512 IPR016024 -
Accr2g01888 708 SUPERFAMILY POZ domain 534 637 IPR011333 -
Accr2g01888 708 Gene3D - 173 276 IPR011989 -
Accr2g01888 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 200 235 IPR000225 GO:0005515
Accr2g01888 708 MobiDBLite consensus disorder prediction 9 34 - -
Accr2g01888 708 Pfam BTB/POZ domain 536 638 IPR000210 GO:0005515
Accr2g01888 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 409 IPR000225 GO:0005515
Accr2g01888 708 Coils Coil 14 34 - -
Accr2g01888 708 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 150 200 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01888 Accr-Chr2 53025118 53031334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01888 293 513 U-box Gene Family AT2G23140 25.764 6.70e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr2g01888 BTB 1.6e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01888 - - sind:105165291 1009.98