Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01823 ATGGCGGAGGGGAAGGAGGAGAGAAAATCTAGCGAGGAAAGTGTGAAATTGTTTGTGGGTCAAGTGCCCAAACACATGACGGAGGATGAGCTTCTTGCAATGTTCAAGGAGTTTGCTTTGGTGGACGAAGTCAACATCATCAAGGACAAAGTTACTCGCTCCTCTCGAGGTTGTTGCTTTGTGATTTGTCCGTCAAGGCAAGAGGCAGACAAGGCGGTCAATGCGTGTCATAACAAGAAGACACTACCTGGGGCATTGAGTCCATTGCAAGTGAAGTATGCCGACGGCGAGTTGGAAAGACTAGAACACAAACTCTTTATTGGTATGCTTCCAAGGAATGTTTCTGAAGCTGAAGTCTCCGCTCTTTTCTCTAAGTATGGAACCATAAAGGATTTACAGATTTTGAGAGGTTCTCAGCAAACAAGTAAAGGCTGTGCGTTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTCTGGAGGCAATCAATGGAAAACATAAGATGGAGGGTTCAAGTGTACCTTTGGTAGTCAAATGGGCAGATACAGAAAAGGAAAGACAAGCTCGGCGGGCTCAGAAAGCACAGTCCCAAGCTTCTAATGCGCCACATAATGATTCTCAGCATCAGTCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCACAATATAATGGATATGCCTATCAGGCTCCCGGGGGTTATGGGCTCATGCCGTACCGCATGCCACCAATGCAGAATCAACCTGGTTTCCATAATATGATGCCTCCCATGAATCAAGGAAATGCATTGGGACCTGAACTTGGTCCCAATATGAACCCCAGAAATTATCACGTGCCTCATGGAAGTTACTATGGTTCTTATCCTCCAGTTCCAGGTGGGAGTGGCAACTCTGCTATGTCTTCAGGTGCCAATAAATATTCCAGTAGTCAGATTGAAGGACCACCTGGTGCCAATCTCTTTATTTATCACATACCCCCTGAATATGGAGATCAAGAGCTGGCAGATGCATTTCAGCCGTTTGGTAGGGTTTTGAGTGCTAAAGTGTTTGTTGATAAAGCAACTGGTGTAAGCAAATGTTTTGGGTTTGTAAGTTATGACTCCCCAGAAGCTGCACAAGCCGCCATTAGTATGATGAACGGATTCCAATTAAGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGACAACAAGCAGAATAAGCCTTACTGA 1212 0.4497 MAEGKEERKSSEESVKLFVGQVPKHMTEDELLAMFKEFALVDEVNIIKDKVTRSSRGCCFVICPSRQEADKAVNACHNKKTLPGALSPLQVKYADGELERLEHKLFIGMLPRNVSEAEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNAPHNDSQHQSLFGALPMGYVPQYNGYAYQAPGGYGLMPYRMPPMQNQPGFHNMMPPMNQGNALGPELGPNMNPRNYHVPHGSYYGSYPPVPGGSGNSAMSSGANKYSSSQIEGPPGANLFIYHIPPEYGDQELADAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQAAISMMNGFQLSGKKLKVQLKRDNKQNKPY 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01823 403 CDD RRM1_2_CELF1-6_like 104 179 - -
Accr2g01823 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Accr2g01823 403 MobiDBLite consensus disorder prediction 193 211 - -
Accr2g01823 403 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Accr2g01823 403 SMART rrm1_1 16 92 IPR000504 GO:0003723
Accr2g01823 403 SMART rrm1_1 319 392 IPR000504 GO:0003723
Accr2g01823 403 SMART rrm1_1 104 179 IPR000504 GO:0003723
Accr2g01823 403 Gene3D - 294 402 IPR012677 -
Accr2g01823 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 396 IPR000504 GO:0003723
Accr2g01823 403 MobiDBLite consensus disorder prediction 185 211 - -
Accr2g01823 403 CDD RRM1_2_CELF1-6_like 16 92 - -
Accr2g01823 403 FunFam RNA-binding protein BRN1 287 395 - -
Accr2g01823 403 FunFam RNA-binding protein BRN1 2 99 - -
Accr2g01823 403 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Accr2g01823 403 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Accr2g01823 403 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Accr2g01823 403 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Accr2g01823 403 PANTHER RNA BINDING PROTEIN 14 397 - -
Accr2g01823 403 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Accr2g01823 403 Gene3D - 99 192 IPR012677 -
Accr2g01823 403 CDD RRM3_CELF1-6 320 392 - -
Accr2g01823 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 390 IPR000504 GO:0003723
Accr2g01823 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 80 IPR000504 GO:0003723
Accr2g01823 403 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Accr2g01823 403 Gene3D - 2 98 IPR012677 -
Accr2g01823 403 SUPERFAMILY RNA-binding domain, RBD 103 400 IPR035979 GO:0003676
Accr2g01823 403 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01823 Accr-Chr2 52237788 52242837 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01823 17 401 Eukaryotic Initiation Factors Gene Family AT2G23350 22.250 2.26e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01823 K13207 - gmx:100813239 677.937