Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01793 ATGGAGTTCTACGGTCGGAACCCAGCTAGGAATGGGTCGCAACCGGGTATTCAATCTGAATGGCACCCATCAGGTGGCGAAACTGGGCTTGAAGAATCTATGTGGCACTTAACCGTCGGTGGCGGCGAATCTTACCCGGAGCGACCTGGCGCACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTGAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACATGGAGGTGGCTCATTAAGTCAAGCTCCACTAAATATTTATGGATACCCGTTACGTCCGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACCTGTAAATTCCATCATCCTCAACCAGCTGGTACATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTAGCCGAACAGTATGGGGGGGCATCCAGCAGCTTGAGAGTGGCCAGGCCGTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTCCTTCTTTCACCAGGTGTTGTTCCCTATCCCGGATGGAGTCCTTATACGGCACCTGTGAGTCCTGTGTTATCTCCTGATGCTCAGTCTGCTCAGTCTGCTGTTGGGGCTACTTCTCTGTATGGAATGACCCAGTTGTCTCCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTTCCATCTATTACTGGCCTTTCAGGCAGTGGCCTGAAGGAACAAATATTTCCTGAAAGACCTGGTGAACCTGAATGCCATTACTATCTGAGAACAGGGGACTGCAAATATGGACTGGCATGTCGATTTCATCATCCCAGGGACCGGACAGTGACCCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGAGTGCAACCTTGTGTTTTTTACTTACGAAACGGGCATTGCAAGTTTGGCTCCACTTGTAAATTTGACCATCCTTTGGTGTCTGTGAGATACAGTCCCTCAGCATCCTCTCTCACTGATATGCGAGTAACTCCATACCCTGTTGGATCCTTGCTGTCTACCCTGGCTCCTTCAACATCATCTTCAGAACTTCGGCCTGAACTGATGTCAGGCTCAGAAGTGGAATCTTTTTCTACTAGAATGTCATCCTCTGGAAATGGTTCTAGCAATTCTGTCAGTTTAATTTTCTCCCAAGGTGGACCTGTCTCTCTTTCTGATGTGCAACTCTCGAGTCAAAGCCCTACTCCTTTAGGCAGTAGCAGAAGCACTAGACAAAGTGGTGATATACGATGA 1425 0.4877 MEFYGRNPARNGSQPGIQSEWHPSGGETGLEESMWHLTVGGGESYPERPGAPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLAEQYGGASSSLRVARPSILPGSYVQGAYGPVLLSPGVVPYPGWSPYTAPVSPVLSPDAQSAQSAVGATSLYGMTQLSPSTSAFARPYTPLPSITGLSGSGLKEQIFPERPGEPECHYYLRTGDCKYGLACRFHHPRDRTVTRPLLSPIGLPLRPGVQPCVFYLRNGHCKFGSTCKFDHPLVSVRYSPSASSLTDMRVTPYPVGSLLSTLAPSTSSSELRPELMSGSEVESFSTRMSSSGNGSSNSVSLIFSQGGPVSLSDVQLSSQSPTPLGSSRSTRQSGDIR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01793 474 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Accr2g01793 474 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Accr2g01793 474 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Accr2g01793 474 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Accr2g01793 474 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Accr2g01793 474 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Accr2g01793 474 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Accr2g01793 474 SUPERFAMILY CCCH zinc finger 303 328 IPR036855 GO:0046872
Accr2g01793 474 SUPERFAMILY CCCH zinc finger 53 77 IPR036855 GO:0046872
Accr2g01793 474 Gene3D - 128 174 - -
Accr2g01793 474 FunFam Zinc finger nuclease 2 47 124 - -
Accr2g01793 474 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Accr2g01793 474 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Accr2g01793 474 MobiDBLite consensus disorder prediction 399 474 - -
Accr2g01793 474 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Accr2g01793 474 SUPERFAMILY CCCH zinc finger 345 370 IPR036855 GO:0046872
Accr2g01793 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 326 IPR000571 GO:0046872
Accr2g01793 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Accr2g01793 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Accr2g01793 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Accr2g01793 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 369 IPR000571 GO:0046872
Accr2g01793 474 MobiDBLite consensus disorder prediction 1 26 - -
Accr2g01793 474 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Accr2g01793 474 Gene3D - 47 127 - -
Accr2g01793 474 Gene3D - 298 380 - -
Accr2g01793 474 PANTHER PROTEIN PHOSPHATASE RELATED 30 391 - -
Accr2g01793 474 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01793 Accr-Chr2 51899382 51904209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01793 1 423 C2H2 Transcription Factor Family AT5G18550 52.596 2.19e-136 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr2g01793 zf-CCCH 3.7e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01793 - - gmx:100812475 786.949