Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01790 ATGGAGCTGTACGGTCGGAATCCGGCTAGGAATGGGTCGCAACCCGGTAATCAATCTGAATGGCACCCGTCAGGCGGCGAGACTGGGCTTGAAGAATCGATGTGGCACTTAACCATCGGTGGCAGCGAATCTTACCCGGAGCGACCCGGCGCACCCAATTGTGTGTATTATATGCGAACCGGCTTCTGTGGATACGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCCGCGGTTGCAGCAGCTGTGAGGGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGCCAGTATTATTTAAAAACGGGAACCTGCAAATTTGGTGCATCTTGTAGATTTCACCATCCAAAACACGGAGGTGGATCATTAAGTCAAGCTCCACTGAATATTTATGGATACCCGTTACGTCTGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAGCCAGCTGGCACATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTAGCCGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTGGCTAGGCCTTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTACCGTCCTACTTTCTCCAGGGGTCGTTCCCTTTCCAGGATGGAGTCCGTATACGGCGCCTGTGAGTCCTGGGTTATCTCCTGGTGCTCAGTCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCGTATACTCCTCTTCCATCTACTACTGGCCTTCCAGGCAGTGGTCTGAAGGAACATATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATTCTATCTGAGAACGGGGGACTGCAAATATGGATTAGCATGTCGATTTCATCATCCCAGGGACCGGACAGTGACCCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCTGGGGTGCAACCTTGTCTTTTTTACTTACAAAACGGGCATTGCAAGTTCGGCTCGACTTGCAAATTTGACCATCCTTTGGGGTCTGTGAGGTACAGTCCATCAGCATCTTCTCTCACTGATATGCCAGTAACTCCATACCCTGTTGGATCCTTGCTGTCTACCCTGGCTCCTTCAACGACATCTTCAGAGCTTCGGCCTGAACTTATGTCAGGCGCCAAAGTGGAATCTTTTGCTTCTAGAATGCCATCCTCTGGAAATGGTTCAAGCAATTCTGTCAGTTTAATTTTCTCACAAGGTGGAACTGTCTCTCTTTCTGATGTGCAGCTCTCAAGTCAAACTGCTACTCCTTCTTTAAGCAGTAGCAGAAGCACTCGACAAAGCGGTGACATACGATGA 1419 0.4954 MELYGRNPARNGSQPGNQSEWHPSGGETGLEESMWHLTIGGSESYPERPGAPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCRFHHPKHGGGSLSQAPLNIYGYPLRLGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLAEQYGGASNSLRVARPSILPGSYVQGAYGTVLLSPGVVPFPGWSPYTAPVSPGLSPGAQSAVGATSLYGVTQLSSSTSAFARPYTPLPSTTGLPGSGLKEHIFPERPGEPECQFYLRTGDCKYGLACRFHHPRDRTVTRPLLSPIGLPLRPGVQPCLFYLQNGHCKFGSTCKFDHPLGSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTTSSELRPELMSGAKVESFASRMPSSGNGSSNSVSLIFSQGGTVSLSDVQLSSQTATPSLSSSRSTRQSGDIR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01790 472 PANTHER PROTEIN PHOSPHATASE RELATED 25 381 - -
Accr2g01790 472 Gene3D - 295 377 - -
Accr2g01790 472 Gene3D - 43 124 - -
Accr2g01790 472 MobiDBLite consensus disorder prediction 448 472 - -
Accr2g01790 472 SUPERFAMILY CCCH zinc finger 140 167 IPR036855 GO:0046872
Accr2g01790 472 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Accr2g01790 472 SUPERFAMILY CCCH zinc finger 53 77 IPR036855 GO:0046872
Accr2g01790 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Accr2g01790 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Accr2g01790 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 166 IPR000571 GO:0046872
Accr2g01790 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Accr2g01790 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Accr2g01790 472 MobiDBLite consensus disorder prediction 1 27 - -
Accr2g01790 472 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Accr2g01790 472 MobiDBLite consensus disorder prediction 10 24 - -
Accr2g01790 472 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Accr2g01790 472 Gene3D - 125 174 - -
Accr2g01790 472 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Accr2g01790 472 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Accr2g01790 472 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Accr2g01790 472 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Accr2g01790 472 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Accr2g01790 472 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Accr2g01790 472 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Accr2g01790 472 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Accr2g01790 472 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Accr2g01790 472 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01790 Accr-Chr2 51878933 51883890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01790 1 416 C2H2 Transcription Factor Family AT5G18550 51.835 7.85e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr2g01790 zf-CCCH 1.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01790 - - gmx:100812475 788.489