Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01742 ATGGCTGAAGGTTTAAATAAGGCTGCCACCCTTTTGTTCTTCTTGGCCATTTTCTTTATTTCTATCCCATGCTTCCAAGCCAACAACGAGGCTGAGCACGACGAATACATCATTAAACGAACCGAGGAAGCCCGTAGAGCCGCCCTTGAAGCCTACGAGCCTGACCCCTATAATGTCACCTCCGAATTCAATCTCCACGTTCACTTAGCTTTGAATGAGAGCAATAGGAGGGCACTACGTGGGAGGAAATACAGAGGACCATGCATGGCCACCAACCCTATTGACAGGTGCTGGCGGTGCAGGCCTAATTGGGCCAATGATCGCATGAGGTTGGCTAGATGTGTGAAGGGTTTTGGCCGGAAGACCACTGGAGGACTAGGCGGCCGGATATATGTGGTCACCGACCCCTCTGACAACGACTTGCAGAACCCCAAGCCCGGAACTCTGAGGTACGGGGTGATCCAGGACGAGCCATTGTGGATCATTTTCAAACACGACATGAACATCGCACTTCAACAGGAACTCCTGGTTAACTCGCACAAGACCATCGACGGCCGTGGCGCCAACGTCCAGATCACCAAAGGTGCTAGCATTTCCTTGTTCATGGTCACCAATGTTATCGTCCACAACATTCGCATCCACAACGTCGTGGCCAAACCAGGTGGTATGATTAGGGACTCAGCTCACCACGTCGGTTTGAGAACCAGGAGCGACGGAGACGCCATCTCCATCTTCGGCGCCTCCAACATCTGGATCGATCATGTTTCAATGTCTAGAGCCGACGATGGGCTCGTTGACGCTATCCAAGGCTCCACCGCCATCACCATCTCCAACTGCCACATGACCAATCACAACGACGTGATGCTGCTGGGAGCAAGCGATGTATACTCAGAGGACAAGAAAATGCAGGTGACGGTGGCGTTCAACCATTTCGGGCAGGGACTGATACAGAGGATGCCAAGGGCAAGATGGGGATTTGTCCACGTAGTGAACAACGACTATACACACTGGCTCATGTACGCCATAGGTGGAAGCTCGGCGCCGACAATACTGAGTCAGGGAAACCGATTCATTGCTCCTCACGAGCGGGCGGCGAAGGAGATAACGCACAGGGAGTACTCGACGGCGCAGGAATGGAGCAGGTGGAAGTGGACGTCGGAGAAGGACTTGTTCATGAACGGAGCGACGTTTCTTCAGTCGGGAGGGCGCGTAATGGCCAAGTCATACGCAAGAGCATCAATGATCAAACCCAGAGATGGATCCTGTGTGACAAGGTTGACCAGGTTTAGTGGTGCTCTTCGTTGCCGAGTGGGAAAACCTTGTTAG 1326 0.5287 MAEGLNKAATLLFFLAIFFISIPCFQANNEAEHDEYIIKRTEEARRAALEAYEPDPYNVTSEFNLHVHLALNESNRRALRGRKYRGPCMATNPIDRCWRCRPNWANDRMRLARCVKGFGRKTTGGLGGRIYVVTDPSDNDLQNPKPGTLRYGVIQDEPLWIIFKHDMNIALQQELLVNSHKTIDGRGANVQITKGASISLFMVTNVIVHNIRIHNVVAKPGGMIRDSAHHVGLRTRSDGDAISIFGASNIWIDHVSMSRADDGLVDAIQGSTAITISNCHMTNHNDVMLLGASDVYSEDKKMQVTVAFNHFGQGLIQRMPRARWGFVHVVNNDYTHWLMYAIGGSSAPTILSQGNRFIAPHERAAKEITHREYSTAQEWSRWKWTSEKDLFMNGATFLQSGGRVMAKSYARASMIKPRDGSCVTRLTRFSGALRCRVGKPC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01742 441 PANTHER PECTATE LYASE 18-RELATED 44 439 IPR045032 GO:0030570
Accr2g01742 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Accr2g01742 441 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Accr2g01742 441 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Accr2g01742 441 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Accr2g01742 441 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Accr2g01742 441 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Accr2g01742 441 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Accr2g01742 441 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Accr2g01742 441 Pfam Pectate lyase, N terminus 31 78 IPR007524 GO:0030570
Accr2g01742 441 SUPERFAMILY Pectin lyase-like 92 432 IPR011050 -
Accr2g01742 441 Pfam Pectate lyase 173 357 IPR002022 -
Accr2g01742 441 Gene3D - 91 434 IPR012334 -
Accr2g01742 441 SMART amb_all 166 363 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01742 Accr-Chr2 50836048 50837789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01742 7 441 Polysaccharide Lyase AT3G01270 53.797 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01742 K01728 - gmx:100780236 578.556