Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr2g01726 | ATGGCCTTCCCTCCTCACTCCTTCTTGTTTCAGAGCCACGAAGATCACGATCACCTCCCTTCCACCTCCATCAACGCCTACACCTCCTTCACACCCAAGCTCTTCGAAGGGATCGAGAACAAGCATGAGGACGATGAGCTTTCCGACGACGGGTCTCAGATGATGATTGGGGAGAAGAAGAAGAGGCTGAACATGGGGCAAGTGAAGGCACTGGAAAAGAGCTTCGAGTTAGGGAACAAGCTTGAGCCTGAACGCAAAATGCAGCTAGCTAAGGCTCTGGGACTTCAGCCAAGGCAGATCGCTATTTGGTTCCAGAATAGGAGGGCCAGATGGAAAACCAAGCAGCTCGAAAAGGAATATGAAACTCTCAAGAAGAAGTTTGAAGCTCTAAAAGCTGATAATGATGCCCTCAAGGCTCATAACCACAAATTACACGCTGAGTTATTGGCTCTAAAGGGGAGAGATTGCTGTGAAGGAGGAACTATGAACCTTAAGAAAGAACCTGAAGTTTGTTGGAGCAATGGGAGTACTGACAATAGTTCGGACATTAACTTGGATCTCTCGAGATCACAATTTATAAACAGTACAGTAACTTCAGTGCACAATGGTAAAAGCCTTCTTCCCTCTAATAATGCCCTTAAGCCAGCCAGCATAACCCAGCTCCTCCAATGCTCTTCAAGATCAGAACTCCAAGATGAAAGCTTCTCCAACATGTTTCAAGGCGGTGGCGGCGTTGATGAGCACCACAATTTCTGGCCCTGGCCAGAGCACGGCAGCCACCAGTTTCATTGA | 792 | 0.4773 | MAFPPHSFLFQSHEDHDHLPSTSINAYTSFTPKLFEGIENKHEDDELSDDGSQMMIGEKKKRLNMGQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYETLKKKFEALKADNDALKAHNHKLHAELLALKGRDCCEGGTMNLKKEPEVCWSNGSTDNSSDINLDLSRSQFINSTVTSVHNGKSLLPSNNALKPASITQLLQCSSRSELQDESFSNMFQGGGGVDEHHNFWPWPEHGSHQFH | 263 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr2g01726 | 263 | ProSiteProfiles | 'Homeobox' domain profile. | 58 | 114 | IPR001356 | GO:0003677 | |
| Accr2g01726 | 263 | Coils | Coil | 106 | 140 | - | - | |
| Accr2g01726 | 263 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 43 | 202 | IPR045224 | GO:0003700 | |
| Accr2g01726 | 263 | ProSitePatterns | 'Homeobox' domain signature. | 89 | 112 | IPR017970 | GO:0000981|GO:0006355 | |
| Accr2g01726 | 263 | Pfam | Homeobox associated leucine zipper | 114 | 153 | IPR003106 | GO:0006355|GO:0043565 | |
| Accr2g01726 | 263 | Gene3D | - | 51 | 124 | - | - | |
| Accr2g01726 | 263 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 49 | 118 | - | - | |
| Accr2g01726 | 263 | CDD | homeodomain | 59 | 115 | IPR001356 | GO:0003677 | |
| Accr2g01726 | 263 | PRINTS | Lambda-repressor HTH signature | 94 | 110 | IPR000047 | GO:0003677 | |
| Accr2g01726 | 263 | PRINTS | Lambda-repressor HTH signature | 85 | 94 | IPR000047 | GO:0003677 | |
| Accr2g01726 | 263 | SMART | HOX_1 | 57 | 118 | IPR001356 | GO:0003677 | |
| Accr2g01726 | 263 | Pfam | Homeodomain | 59 | 112 | IPR001356 | GO:0003677 | |
| Accr2g01726 | 263 | SUPERFAMILY | Homeodomain-like | 55 | 116 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr2g01726 | Accr-Chr2 | 50552170 | 50553759 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr2g01726 | 1 | 254 | Homeobox Transcription Factor Family | AT3G01220 | 49.301 | 5.39e-76 | 231 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | HB-HD-ZIP | Accr2g01726 | Homeodomain | 1.3e-15 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr2g01726 | K09338 | - | gmx:100790803 | 348.977 |