Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01725 ATGGCCTTCCCTCCTCACTCCTTCTTGTTTCAGAGCCACGAAGATCACGATCACCTCCCTTCCACCTCCATCAACGCCTACACCTCCTTCACACCCAAGCTCTTCGAAGGGGGTGCAGTACCTTTGATGTTGAAGAGATCGATGTCATTTTCAGGGATCGAGAACAAGCATGAGGACGATGAGCTTTCCGACGACGGGTCTCAGATGATGATTGGGGAGAAGAAGAAGAGGCTGAACATGGGGCAAGTGAAGGCACTGGAAAAGAGCTTCGAGTTAGGGAACAAGCTTGAGCCTGAACGCAAAATGCAGCTAGCTAAGGCTCTGGGACTTCAGCCAAGGCAGATCGCTATTTGGTTCCAGAATAGGAGGGCCAGATGGAAAACCAAGCAGCTCGAAAAGGAATATGAAACTCTCAAGAAGAAGTTTGAAGCTCTAAAAGCTGATAATGATGCCCTCAAGGCTCATAACCACAAATTACACGCTGAGTTATTGGCTCTAAAGGGGAGAGATTGCTGTGAAGGAGGAACTATGAACCTTAAGAAAGAACCTGAAGTTTGTTGGAGCAATGGGAGTACTGACAATAGTTCGGACATTAACTTGGATCTCTCGAGATCACAATTTATAAACAGTACAGTAACTTCAGTGCACAATGGTAAAAGCCTTCTTCCCTCTAATAATGCCCTTAAGCCAGCCAGCATAACCCAGCTCCTCCAATGCTCTTCAAGATCAGAACTCCAAGATGAAAGCTTCTCCAACATGTTTCAAGGCGGTGGCGGCGTTGATGAGCACCACAATTTCTGGCCCTGGCCAGAGCACGGCAGCCACCAGTTTCATTGA 837 0.4755 MAFPPHSFLFQSHEDHDHLPSTSINAYTSFTPKLFEGGAVPLMLKRSMSFSGIENKHEDDELSDDGSQMMIGEKKKRLNMGQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYETLKKKFEALKADNDALKAHNHKLHAELLALKGRDCCEGGTMNLKKEPEVCWSNGSTDNSSDINLDLSRSQFINSTVTSVHNGKSLLPSNNALKPASITQLLQCSSRSELQDESFSNMFQGGGGVDEHHNFWPWPEHGSHQFH 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01725 278 PRINTS Lambda-repressor HTH signature 100 109 IPR000047 GO:0003677
Accr2g01725 278 PRINTS Lambda-repressor HTH signature 109 125 IPR000047 GO:0003677
Accr2g01725 278 CDD homeodomain 74 130 IPR001356 GO:0003677
Accr2g01725 278 SMART HOX_1 72 133 IPR001356 GO:0003677
Accr2g01725 278 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Accr2g01725 278 Gene3D - 67 139 - -
Accr2g01725 278 SUPERFAMILY Homeodomain-like 67 131 IPR009057 -
Accr2g01725 278 Coils Coil 121 155 - -
Accr2g01725 278 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Accr2g01725 278 ProSiteProfiles 'Homeobox' domain profile. 73 129 IPR001356 GO:0003677
Accr2g01725 278 Pfam Homeobox associated leucine zipper 129 168 IPR003106 GO:0006355|GO:0043565
Accr2g01725 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 47 217 IPR045224 GO:0003700
Accr2g01725 278 FunFam Homeobox-leucine zipper protein ATHB-13 64 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01725 Accr-Chr2 50552170 50553759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01725 1 271 Homeobox Transcription Factor Family AT3G01220 51.601 3.96e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr2g01725 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01725 K09338 - gmx:100790803 371.703