LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g01602	ATGGAGCAGAACGACGAGATCGCGCCGTTCGTCATAAAGACTTACCACATAGTCAACGATCCCAGGACCGATAATCTCGTCGCTTGGGGGACTGCCAATAACAGCTTCATCGTCCTCGACCCTCTGGATTTCTCTCGATGCGTCTTACCTGCCTTTTTCAAGCACAACAACTTCTCCAGCTTCGTTCGTCAGCTCAATACCTATGGTTTCAAAAAGGTGGATCCAGATCGATGGGAGTTTGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCAGCTGCTGGTGAACGTAGTGAGGAGGAAGCAGAGCAAGAATAAGAACCTTATGTGCTATCCTGAGGGGTTGGAGGAATTGGATGAGGAAGTGTTAGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAGGCGTTGGATAGGGAGGTGGAAGGGATCAATAAGAGGTTGGAGGCGACGGAGAGACGACCTCAGAAAATGATGGCGTTTCTGCGCAAAGTGGTGGAGGACCCTGACGTGTTATCACGCATATTGGCTGAGAGAGAAGAAAGACAGCTGGCCGAGAAGCGGCGGCGCTTGATGACGTCAGCCACCGCTGCCACCACCTCGTCTTCGTCTGGCATGGCTGTCAACACAAAGGTGGAAGAAGACGAGGAATCACCGTATTGGCGGGGCCGAATTAGCCAAGCTACACTTGATAAACCGCCTTGGAGTCAGCAGAGTAATAGTGACGCCACCACGGGAACGGCGGTGGGAACAGTGTGGCCGCCTCAAGGAGGGATGTACTCGGGATGCCACGCCGGTGACGCTCAGTTGACTTATTTTACCGATGTGGCGCCGGAGACTCAAAGCAAACCGCCGCCTTATCCATTTTCGCTGTTGGAATGGGGCTTTTAA	888	0.5327	MEQNDEIAPFVIKTYHIVNDPRTDNLVAWGTANNSFIVLDPLDFSRCVLPAFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEWFLRGQKQLLVNVVRRKQSKNKNLMCYPEGLEELDEEVLVMEIARLKEEQKALDREVEGINKRLEATERRPQKMMAFLRKVVEDPDVLSRILAEREERQLAEKRRRLMTSATAATTSSSSGMAVNTKVEEDEESPYWRGRISQATLDKPPWSQQSNSDATTGTAVGTVWPPQGGMYSGCHAGDAQLTYFTDVAPETQSKPPPYPFSLLEWGF	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g01602	295	MobiDBLite	consensus disorder prediction	192	208	-	-
	Accr2g01602	295	ProSitePatterns	HSF-type DNA-binding domain signature.	49	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Accr2g01602	295	Gene3D	-	2	100	IPR036388	-
	Accr2g01602	295	FunFam	Heat stress transcription factor B-4	2	100	-	-
	Accr2g01602	295	MobiDBLite	consensus disorder prediction	192	218	-	-
	Accr2g01602	295	Coils	Coil	119	153	-	-
	Accr2g01602	295	SUPERFAMILY	"Winged helix" DNA-binding domain	7	99	IPR036390	-
	Accr2g01602	295	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Accr2g01602	295	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Accr2g01602	295	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Accr2g01602	295	SMART	hsfneu3	6	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Accr2g01602	295	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	6	213	IPR027725	-
	Accr2g01602	295	Pfam	HSF-type DNA-binding	10	99	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g01602	Accr-Chr2	48440119	48441191	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g01602	9	207	HSF	AT4G17750	43.348	4.79e-57	189

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Accr2g01602		HSF_DNA-bind	1.4e-28	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g01602	K09419		-	gmx:100794896	311.227