LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g01578	ATGGCAAACCGACTAAAGGAAGATGAGAAGAATGAACGAACAATTCGGGGCCTTCTGAAACTTCAAGAGAATCGTAGGTGTATTAATTGCGGCAGCCTGGGACCGCAATATGTTTGCACAAATTTTTGGACATTTGTTTGCACAAACTGTAGTGGAATACACCGGGAATTCACACATCGAGTAAAATCAATTTCGATGGCTAAATTTACTTCACAAGAAGTTATTACACTTCAGGAAGGAGGAAATAAGCGTGCAAAGGAAATTTATTTTAAAGAATGGGATCCACAACGTCATTCTCTTCCTGATAGCAGTAATATTGACAGGCTCCGGGACTTTATTAAGCATGTTTACGTGGATAGAAGATATAGTGGTGAGAAGACCTATGACAAACCACCGAGAGGAAAGATGGGTGACAAGGATGATTTCTATGAAAACAGAAGAGTTGAGGCATATCAGGGAGGATCTAAAAGCCCCCCATATGAGGATGCGCATGAACGTCGTTACAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGACAATATGGTGATTATAGGAGAAGCCCAGGTCGTCCACCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGCAGATCGAAGATCATCTGATGGAGATTTTAAGCTGGAAGGCCAATCGCCTGAGCGAGCAAAAGATTTTGATTCTTCAAGTTCGCCTGTTGTACGGCCTGTTAGAGATATTTTGGGAGAAAATGTAGTTCCTCTTCAAATAAGTGAACCCCCCAAAGCAAACAGTGGAAAGCCTGCTGATGGCTCTGCACTCACACAGAGAACAGCATCTTCCAGTAGCTTGGCATCTAGTAATGGAAACGCTGCAGAAGTTAAGCTTGAGCCTACTAAGAGCCTTATTGATTTTGATGCTGAGCTTGAACCTCCTGTTGCTCCAGCAATTCCTCAAGCTCAACAAACTACTGCTGTCCAATCTGCCGTGCATCCAGCAAATTCTAGTGATAACAACTGGGCATCTTTTGATGTTGCCCCTGCAGCAAAAACAACCCAAGGTCCTTCAAATTTAAGTCCACTTGAATCTGTTCTCTCACAACTAGCAATGCCATCACCTGTCCCTGCCCCTGCACCTGCTCAGGTTTCTGGAGTTCAAGGGCCTCTGCCAGTATCAGCTGTCACTGCCGCAGCTGTTGGAACTTTTGGCAACTTCTCATCAGTGCCACTAAGTGGTACTTCTGTAACAGCCCCTGGATTGATGACAGCACCATCAATCAGCAATGCGGGCCAGTGGGCCGGTGTGCAACACAACCAACCTGTGTTCCCTGCCACGGGTAGTCATCCTGCTACTCAACAATTCTTTCCATCAGCAGGTGGATCTTTGAATAGTCAGCAGTGGAGTGTATCTCCAGTGCCCACAATGCAAGGGCACCCTAGCATACAAATGCCACATGCATCCTCACTTATCTCAAAACCGGCCAATGAGGTTAGTGCTATTGCTGCTTCACTGCCGCCAAAAGAAGTGCAACCAAGTGGAAGAAAAGAAATTCCTGAGGATCTCTTCACTGCAAGGTATTCATCCTTCACTTCTCCTGCTTCAGGGTGGCAAATGGGTCCTCCTCGTGGCATGGGTATCCATATGCAATATAATACTGCCGTGCACATGCCAAGTTTTCCACAGTCATCAAAATCAACAAATCCATTTGATGTCAGCAGCGAACCACCTCCAGTTCAAGCCCCAACATTTCCTTCCATGTCATCTATGCAAGGTGCTCTGCCAAGTATACCACCTTCAGGTGTAATACACCCTCCAAGCGTGGGTAATCCTTCACTTTACTGGCGCTTACCCCAGTCATCATATGGTTCAGTACTCCCTCCGCAAGCTCAAGTTCATGCACCAGCAATGGCAACAAGGGCATACGTGGGGCAACAAGTGCCGACTAACATGCCAATGCCTAGGCATCAAGAAATTGGAAATTCTGGCGCACAGGGAGCTGCTTTTGGCATCTCAAATCCAGATCAGCAGATAACTGGTATGTTCTCAACAGCTGCTGCGGCAAATTCCTTCTCTGCTGGAGGCAACCCCTTTGGGTGA	2097	0.4621	MANRLKEDEKNERTIRGLLKLQENRRCINCGSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVITLQEGGNKRAKEIYFKEWDPQRHSLPDSSNIDRLRDFIKHVYVDRRYSGEKTYDKPPRGKMGDKDDFYENRRVEAYQGGSKSPPYEDAHERRYSDRSSPGGRSPGYDQESRQYGDYRRSPGRPPIINDWRREDRFADRRSSDGDFKLEGQSPERAKDFDSSSSPVVRPVRDILGENVVPLQISEPPKANSGKPADGSALTQRTASSSSLASSNGNAAEVKLEPTKSLIDFDAELEPPVAPAIPQAQQTTAVQSAVHPANSSDNNWASFDVAPAAKTTQGPSNLSPLESVLSQLAMPSPVPAPAPAQVSGVQGPLPVSAVTAAAVGTFGNFSSVPLSGTSVTAPGLMTAPSISNAGQWAGVQHNQPVFPATGSHPATQQFFPSAGGSLNSQQWSVSPVPTMQGHPSIQMPHASSLISKPANEVSAIAASLPPKEVQPSGRKEIPEDLFTARYSSFTSPASGWQMGPPRGMGIHMQYNTAVHMPSFPQSSKSTNPFDVSSEPPPVQAPTFPSMSSMQGALPSIPPSGVIHPPSVGNPSLYWRLPQSSYGSVLPPQAQVHAPAMATRAYVGQQVPTNMPMPRHQEIGNSGAQGAAFGISNPDQQITGMFSTAAAANSFSAGGNPFG	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g01578	698	MobiDBLite	consensus disorder prediction	319	338	-	-
	Accr2g01578	698	MobiDBLite	consensus disorder prediction	269	292	-	-
	Accr2g01578	698	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Accr2g01578	698	MobiDBLite	consensus disorder prediction	459	478	-	-
	Accr2g01578	698	MobiDBLite	consensus disorder prediction	556	573	-	-
	Accr2g01578	698	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Accr2g01578	698	PANTHER	ARFGAP/RECO-RELATED	1	698	IPR044820	GO:0005096
	Accr2g01578	698	MobiDBLite	consensus disorder prediction	124	143	-	-
	Accr2g01578	698	Gene3D	Arf GTPase activating protein	1	131	IPR038508	-
	Accr2g01578	698	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Accr2g01578	698	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096
	Accr2g01578	698	CDD	ArfGap_AGFG	12	122	-	-
	Accr2g01578	698	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Accr2g01578	698	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Accr2g01578	698	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Accr2g01578	698	MobiDBLite	consensus disorder prediction	149	292	-	-
	Accr2g01578	698	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	135	-	-
	Accr2g01578	698	MobiDBLite	consensus disorder prediction	199	230	-	-
	Accr2g01578	698	MobiDBLite	consensus disorder prediction	556	579	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g01578	Accr-Chr2	48033051	48039679	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g01578	12	122	C2H2 Transcription Factor Family	AT4G21160	33.333	1.72e-12	67.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g01578	-		-	gmx:102669541	917.531