Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01478 ATGCCTATTGTTTCAGATGCTTCTGCAACTGCAGAACGCATGAAATGCAGAAGACCAAGAAGCCATTTTGGTCATCTCATTCAAGAAGCAGATCCGAATCCGGCTATCCCATCAATCATTGAGTTCACTGACTGCAAGTCAACCATCTCGTCTCTTCTTCTCTCTACTTTCTCTAACAACTCGACGAATGAGACTATGCAGAGCAACGGCATCAACATCGCCGGCAGTGGCCGTAGCAAGAAGAAGAACAATTTTTCGGCGGCTGCAACCTTCAGAGGGCTCGGATGCACCGCCGGTGCGTCGCAGCAGGTTTCTGTTCCGGCGGTGATTCGGACGTCGGCGGACTGGCAAGGAAAGAAGGCTAGAAAGAAGAAGCACAAAAGAAATAGCACCAAAACCTGCCCTGGGGTTCTTGATGGTTCTGGTTCTGCTAATTGCGTTGATTTTCAAGATGTTTGGTGTGGTCCTGGAATTGGGTTTTCTTCAGATGCTGCTGCTTCTGTTGATTGCGTCGTGGCGAGGAAGAATGTTTCTTCAAGAGGCAAGATTGATGTGGAAAGGATGACTCACAGAGAGCGAGTATCCTATCTGGGAAGACGAACAGTTAACCCAGAAACCATATCGTTTCTGGACAATGATCCTGATATCTTCCCAACTCGTCCTCCTGCTCCTGATCCCTATGCAACTTCAAGATATTATCGTCATGTTCGACATCCTTCATCTGAAGGTTTCGCTGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGAGGAATATTAGATTCACATGACCAATTCAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAACTGCTTGAGCTTGAAGAGAAGATTGGTTATGTCAGCACTGGTCTTAAAGAAGACGAGATAGGATGCCACATAAGGAAAATTCGATATCCATTTTTGAGCGAAGCATTGAAGCACCATATTAACAAAAAGTGCAGCATTTGTCAGGAAGAATATGAAGGAGATGATGAGGTGGGGAAGCTAAATTGTGAACACAATTATCACTTTGAGTGCATCAGACAATGGCTTGCACAGAAAAACTTCTGCCCTGTCTGTAAGCAAGAAGTTGTGGTTCGTCATTAG 1119 0.4513 MPIVSDASATAERMKCRRPRSHFGHLIQEADPNPAIPSIIEFTDCKSTISSLLLSTFSNNSTNETMQSNGINIAGSGRSKKKNNFSAAATFRGLGCTAGASQQVSVPAVIRTSADWQGKKARKKKHKRNSTKTCPGVLDGSGSANCVDFQDVWCGPGIGFSSDAAASVDCVVARKNVSSRGKIDVERMTHRERVSYLGRRTVNPETISFLDNDPDIFPTRPPAPDPYATSRYYRHVRHPSSEGFAEIMMLQGGLLMGGILDSHDQFRDWRLDVDNMSYEQLLELEEKIGYVSTGLKEDEIGCHIRKIRYPFLSEALKHHINKKCSICQEEYEGDDEVGKLNCEHNYHFECIRQWLAQKNFCPVCKQEVVVRH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01478 372 Pfam Ring finger domain 323 365 IPR001841 -
Accr2g01478 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 370 IPR013083 -
Accr2g01478 372 SUPERFAMILY RING/U-box 323 370 - -
Accr2g01478 372 SMART ring_2 324 364 IPR001841 -
Accr2g01478 372 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Accr2g01478 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 107 368 IPR045191 GO:0061630
Accr2g01478 372 FunFam E3 ubiquitin-protein ligase rnf12-A 291 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01478 Accr-Chr2 45899203 45903024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g01478 2 279 C3H Transcription Factor Family AT1G73760 40.199 1.97e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01478 - - qsa:O6P43_005125 513.457